Genomic tRNA Database

Introduction

This genomic tRNA database contains tRNA gene predictions made by the program tRNAscan-SE (Lowe & Eddy, Nucl Acids Res 25: 955-964, 1997) on complete or nearly complete genomes. Unless otherwise noted, all annotation is automated, and has not been inspected for agreement with published literature.

Inevitably with automated sequence analysis, we find exceptions to general identification rules, isoacceptor type predictions (esp. due to variable post-transcriptional anticodon modification), and questionable tRNA identifications (due to pseudogenes, SINES, or other tRNA-derived elements). We attempt to document all cases we come across, and welcome feedback (lowe @soe.ucsc.edu) on new or unrecognized discrepancies. For a more detailed description of information in tables and the tRNA search algorithm, see the [Legend].

Genomes

[Eukarya] [Archaea] [Bacteria]

Eukarya

[Diplogasterida] [Echinozoa] [Embryophyta] [Fungi] [Haemosporida] [Insecta] [Leishmania]

[Rhabditida] [Tracheophyta] [Vertebrata]

Diplogasterida (1 genome) [Top]

Pristionchus pacificus (WUGSC 5.0 Feb 2007) (1278 tRNAs)
Echinozoa (1 genome) [Top]

Strongylocentrotus purpuratus (Sea urchin) (Version 2.1) (1065 tRNAs)
Embryophyta (4 genomes) [Top]

Brachypodium distachyon (JGI v1.0 8X) (639 tRNAs) Physcomitrella patens (Version 1.1) (417 tRNAs) Sorghum bicolor (Version 1.0) (577 tRNAs)

Zea mays (Version 4a.53) (1163 tRNAs) Zea mays (Version 5b.60) (1198 tRNAs)
Fungi (11 genomes) [Top]

Aspergillus fumigatus (178 tRNAs) Candida glabrata CBS138 (221 tRNAs) Cryptococcus neoformans var JEC21 (141 tRNAs)

Debaryomyces hansenii CBS767 (220 tRNAs) Encephalitozoon cuniculi (46 tRNAs) Eremothecium gossypii (202 tRNAs)

Kluyveromyces lactis NRRL Y-1140 (175 tRNAs) Magnaporthe oryzae 70-15 (v8) (190 tRNAs) Saccharomyces cerevisiae (286 tRNAs)

Schizosaccharomyces pombe (186 tRNAs) Yarrowia lipolytica CLIB99 (510 tRNAs)
Haemosporida (1 genome) [Top]

Plasmodium falciparum (Oct 2007) (35 tRNAs)
Insecta (2 genomes) [Top]

Anopheles gambiae (414 tRNAs) Drosophila melanogaster (Release 5 Apr 2006) (298 tRNAs)
Leishmania (1 genome) [Top]

Leishmania major (Version 5.0) (82 tRNAs)
Rhabditida (8 genomes) [Top]

Caenorhabditis brenneri (WUGSC 4.0 Jan 2007) (1076 tRNAs) Caenorhabditis brenneri (WUGSC 6.0.1 Feb 2008) (1073 tRNAs) Caenorhabditis briggsae (cb3 Jan 2007) (772 tRNAs)

Caenorhabditis elegans (WS170 Jan 2007) (605 tRNAs) Caenorhabditis elegans (WS190 May 2008) (605 tRNAs) Caenorhabditis japonica (WUGSC 3.0.2 Mar 2008) (799 tRNAs)

Caenorhabditis remanei (WUGSC 1.0 Mar 2006) (782 tRNAs) Caenorhabditis remanei (WUGSC 15.0.1 May 2007) (789 tRNAs)
Tracheophyta (5 genomes) [Top]

Arabidopsis thaliana (Feb 2004) (630 tRNAs) Glycine max (soybean) (Dec 2008 Glyma 1.0) (860 tRNAs) Medicago truncatula (March 2009 Version 3.0) (581 tRNAs)

Oryza sativa (738 tRNAs) Populus trichocarpa (Jan 2010 Version 2.0) (617 tRNAs)
Vertebrata (45 genomes) [Top]

Ailuropoda melanoleuca (panda) (BGI-Shenzhen AilMel 1.0 Dec 2009) (1461 tRNAs) Anolis carolinensis (lizard) (Broad AnoCar2.0 May 2010) (210 tRNAs) Bos taurus (cow) (Baylor release Btau_4.0 Oct 2007) (4112 tRNAs)

Bos taurus (cow) (UMD 3.1 Nov 2009) (4011 tRNAs) Callithrix jacchus (marmoset) (WUGSC 3.2 Mar 2009) (357 tRNAs) Canis familiaris (dog) (May 2005) (898 tRNAs)

Cavia porcellus (Guinea pig) (Broad Feb 2008) (382 tRNAs) Cricetulus griseus cell line CHO-K1 (Chinese hamster ovary CriGri 1.0 Aug 2011) (496 tRNAs) Danio rerio (Zebrafish) (Zv7 Jul 2007) (12752 tRNAs)

Danio rerio (Zebrafish) (Zv8 Apr 2009) (12244 tRNAs) Danio rerio (Zebrafish) (Zv9 Jul 2010) (12794 tRNAs) Equus caballus (horse) (Jan 2007) (499 tRNAs)

Equus caballus (horse) (Sep 2007) (490 tRNAs) Felis catus (cat) (Broad Release 3 May 2005) (2344 tRNAs) Felis catus (cat) (catChrV17e Dec 2008) (3039 tRNAs)

Gallus gallus (galGal3 May 2006) (241 tRNAs) Gallus gallus (galGal4 Nov 2011) (278 tRNAs) Gasterosteus aculeatus (stickleback) (Broad 1.0 Feb 2006) (2488 tRNAs)

Gorilla gorilla gorilla (gorilla) (gorGor3.1 May 2011) (387 tRNAs) Heterocephalus glaber (naked mole-rat) (BGI HetGla 1.0 Jul 2011) (360 tRNAs) Homo sapiens (hg18 - NCBI Build 36.1 Mar 2006) (513 tRNAs)

Homo sapiens (hg19 - NCBI Build 37.1 Feb 2009) (506 tRNAs) Loxodonta africana (elephant) (Broad/July 2009) (1978 tRNAs) Macaca mulatta (Rhesus) (Jan 2006) (378 tRNAs)

Meleagris gallopavo (turkey) (TGC Turkey_2.01 Dec 2009) (155 tRNAs) Microcebus murinus (Mouse lemur) (Jun 2003) (258 tRNAs) Monodelphis domestica (opossum) (Broad Oct 2006) (481 tRNAs)

Mus musculus (mm10 Dec 2011) (432 tRNAs) Mus musculus (mm9 July 2007) (430 tRNAs) Nomascus leucogenys (Northern White-Cheeked Gibbon) (GGSC Nleu1.0 Jan 2010) (386 tRNAs)

Ornithorhynchus anatinus (platypus) (WUGSC 5.0.1 Mar 2007) (851 tRNAs) Oryctolagus cuniculus (rabbit) (Broad Apr 2009) (505 tRNAs) Oryzias latipes (Medaka) (Oct 2005) (621 tRNAs)

Ovis aries (sheep) (Feb 2010) (1172 tRNAs) Pan troglodytes (chimp) (Mar 2006) (459 tRNAs) Pan troglodytes (chimp) (Oct 2010) (456 tRNAs)

Papio hamadryas (baboon) (Nov 2008) (410 tRNAs) Petromyzon marinus (lamprey) (WUSTL 3.0 Mar 2007) (2328 tRNAs) Pongo pygmaeus abelii (orangutan) (July 2007) (468 tRNAs)

Rattus norvegicus (rn4 Nov 2004) (437 tRNAs) Rattus norvegicus (rn5 Mar 2012) (406 tRNAs) Sus scrofa (pig) (SGSC Sscrofa9.2 Nov 2009) (731 tRNAs)

Taeniopygia guttata (Zebra finch) (WUSTL 3.2.4 Jul 2008) (191 tRNAs) Takifugu rubripes (fr2 Oct 2004) (588 tRNAs) Tarsier syrichta (Tarsier) (Aug 2008) (330 tRNAs)

Tetraodon nigroviridis (tetraodon) (Genoscope 8.0 Mar 2007) (486 tRNAs) Xenopus tropicalis (frog) (JGI 4.2 Nov 2009) (2581 tRNAs)
Number of Genomes in Eukarya: 82

[Top]

Archaea
[Crenarchaeota] [Euryarchaeota] [Korarchaeota] [Nanoarchaeota] [Thaumarchaeota]

Crenarchaeota (25 genomes) [Top]

Acidilobus saccharovorans 345 15 uid51395 (46 tRNAs) Aeropyrum pernix (46 tRNAs) Caldivirga maquilingensis IC-167 (47 tRNAs)

Desulfurococcus kamchatkensis 1221n (47 tRNAs) Hyperthermus butylicus (47 tRNAs) Ignicoccus hospitalis KIN4 I (47 tRNAs)

Ignisphaera aggregans DSM 17230 uid51875 (46 tRNAs) Metallosphaera sedula DSM 5348 (48 tRNAs) Pyrobaculum aerophilum (46 tRNAs)

Pyrobaculum arsenaticum DSM 13514 (46 tRNAs) Pyrobaculum calidifontis JCM 11548 (46 tRNAs) Pyrobaculum islandicum DSM 4184 (46 tRNAs)

Sulfolobus acidocaldarius DSM 639 (50 tRNAs) Sulfolobus islandicus L D 8 5 uid43679 (46 tRNAs) Sulfolobus islandicus L S 2 15 (46 tRNAs)

Sulfolobus islandicus M 14 25 (46 tRNAs) Sulfolobus islandicus M 16 27 (46 tRNAs) Sulfolobus islandicus M 16 4 (46 tRNAs)

Sulfolobus islandicus Y G 57 14 (47 tRNAs) Sulfolobus islandicus Y N 15 51 (46 tRNAs) Sulfolobus solfataricus (46 tRNAs)

Sulfolobus tokodaii (48 tRNAs) Thermoproteus neutrophilus V24Sta (46 tRNAs) Thermoproteus tenax (46 tRNAs)

Vulcanisaeta distributa DSM 14429 uid52827 (46 tRNAs)
Euryarchaeota (57 genomes) [Top]

Aciduliprofundum boonei T469 uid43333 (46 tRNAs) Archaeoglobus fulgidus (47 tRNAs) Archaeoglobus profundus DSM 5631 uid43493 (47 tRNAs)

Candidatus Methanoregula boonei 6A8 (49 tRNAs) Candidatus Methanosphaerula palustris E1 9c (56 tRNAs) Ferroglobus placidus DSM 10642 uid40863 (50 tRNAs)

Ferroplasma acidarmanus fer1 (45 tRNAs) Halalkalicoccus jeotgali B3 uid50305 (48 tRNAs) Haloarcula marismortui ATCC 43049 (50 tRNAs)

Halobacterium salinarum R1 (47 tRNAs) Halobacterium sp (47 tRNAs) Haloferax volcanii DS2 (51 tRNAs)

Halomicrobium mukohataei DSM 12286 (47 tRNAs) Haloquadratum walsbyi (45 tRNAs) Halorhabdus utahensis DSM 12940 (45 tRNAs)

Haloterrigena turkmenica DSM 5511 uid43501 (51 tRNAs) Methanobacterium thermoautotrophicum (39 tRNAs) Methanobrevibacter smithii ATCC 35061 (36 tRNAs)

Methanocaldococcus FS406 22 uid42499 (36 tRNAs) Methanocaldococcus fervens AG86 (36 tRNAs) Methanocaldococcus infernus ME uid48803 (37 tRNAs)

Methanocaldococcus vulcanius M7 (36 tRNAs) Methanocella paludicola SANAE (47 tRNAs) Methanococcoides burtonii DSM 6242 (50 tRNAs)

Methanococcus aeolicus Nankai-3 (38 tRNAs) Methanococcus jannaschii (36 tRNAs) Methanococcus maripaludis C5 (37 tRNAs)

Methanococcus maripaludis C6 (37 tRNAs) Methanococcus maripaludis C7 (37 tRNAs) Methanococcus maripaludis S2 (37 tRNAs)

Methanococcus vannielii SB (37 tRNAs) Methanocorpusculum labreanum Z (53 tRNAs) Methanoculleus marisnigri JR1 (49 tRNAs)

Methanohalobium evestigatum Z 7303 uid49857 (49 tRNAs) Methanohalophilus mahii DSM 5219 uid47313 (52 tRNAs) Methanoplanus petrolearius DSM 11571 uid52695 (48 tRNAs)

Methanopyrus kandleri (34 tRNAs) Methanosaeta thermophila PT (47 tRNAs) Methanosarcina acetivorans (61 tRNAs)

Methanosarcina barkeri fusaro (61 tRNAs) Methanosarcina mazei (57 tRNAs) Methanosphaera stadtmanae (42 tRNAs)

Methanospirillum hungatei JF-1 (51 tRNAs) Methanothermobacter marburgensis Marburg uid51637 (40 tRNAs) Natrialba magadii ATCC 43099 uid46245 (49 tRNAs)

Natronomonas pharaonis (45 tRNAs) Picrophilus torridus DSM 9790 (47 tRNAs) Pyrococcus abyssi (46 tRNAs)

Pyrococcus furiosus (46 tRNAs) Pyrococcus horikoshii (46 tRNAs) Thermococcus gammatolerans EJ3 (46 tRNAs)

Thermococcus kodakaraensis KOD1 (46 tRNAs) Thermococcus onnurineus NA1 (46 tRNAs) Thermococcus sibiricus MM 739 (46 tRNAs)

Thermoplasma acidophilum (45 tRNAs) Thermoplasma volcanium (45 tRNAs) uncultured methanogenic archaeon RC-I (53 tRNAs)

Korarchaeota (1 genome) [Top]

Candidatus Korarchaeum cryptofilum OPF8 (46 tRNAs)
Nanoarchaeota (1 genome) [Top]

Nanoarchaeum equitans (44 tRNAs)
Thaumarchaeota (2 genomes) [Top]

Cenarchaeum symbiosum (46 tRNAs) Nitrosopumilus maritimus SCM1 (44 tRNAs)
Number of Genomes in Archaea: 86

[Top]

Bacteria

[Acidobacteria] [Actinobacteria] [Alphaproteobacteria] [Aquificae] [Bacteroidetes] [Betaproteobacteria]

[Chlamydiae] [Chlorobi] [Chloroflexi] [Cyanobacteria] [Deinococcus-Thermus] [Deltaproteobacteria]

[Epsilonproteobacteria] [Firmicutes] [Fusobacteria] [Gammaproteobacteria] [Magnetococcus] [Planctomycetes]

[Spirochaetes] [Tenericutes] [Thermotogae] [Verrucomicrobia] [ssDNA viruses]

Acidobacteria (2 genomes) [Top]

Acidobacteria bacterium Ellin345 (46 tRNAs) Solibacter usitatus Ellin6076 (50 tRNAs)
Actinobacteria (51 genomes) [Top]

Acidothermus cellulolyticus 11B (45 tRNAs) Arthrobacter FB24 (51 tRNAs) Arthrobacter aurescens TC1 (54 tRNAs)

Bifidobacterium adolescentis ATCC 15703 (54 tRNAs) Bifidobacterium longum (56 tRNAs) Clavibacter michiganensis NCPPB 382 (45 tRNAs)

Clavibacter michiganensis sepedonicus (45 tRNAs) Corynebacterium diphtheriae (52 tRNAs) Corynebacterium efficiens YS-314 (56 tRNAs)

Corynebacterium glutamicum ATCC 13032 Bielefeld (60 tRNAs) Corynebacterium glutamicum ATCC 13032 Kitasato (60 tRNAs) Corynebacterium glutamicum R (57 tRNAs)

Corynebacterium jeikeium K411 (50 tRNAs) Corynebacterium urealyticum DSM 7109 (51 tRNAs) Frankia CcI3 (45 tRNAs)

Frankia EAN1pec (46 tRNAs) Frankia alni ACN14a (44 tRNAs) Kineococcus radiotolerans SRS30216 (48 tRNAs)

Leifsonia xyli xyli CTCB0 (45 tRNAs) Mycobacterium JLS (47 tRNAs) Mycobacterium KMS (47 tRNAs)

Mycobacterium MCS (47 tRNAs) Mycobacterium avium 104 (45 tRNAs) Mycobacterium avium paratuberculosis (45 tRNAs)

Mycobacterium bovis (45 tRNAs) Mycobacterium bovis BCG Pasteur 1173P2 (47 tRNAs) Mycobacterium gilvum PYR-GCK (46 tRNAs)

Mycobacterium leprae (45 tRNAs) Mycobacterium marinum M (45 tRNAs) Mycobacterium smegmatis MC2 155 (46 tRNAs)

Mycobacterium tuberculosis CDC1551 (45 tRNAs) Mycobacterium tuberculosis F11 (45 tRNAs) Mycobacterium tuberculosis H37Ra (45 tRNAs)

Mycobacterium tuberculosis H37Rv (45 tRNAs) Mycobacterium ulcerans Agy99 (45 tRNAs) Mycobacterium vanbaalenii PYR-1 (49 tRNAs)

Nocardia farcinica IFM10152 (53 tRNAs) Nocardioides JS614 (46 tRNAs) Propionibacterium acnes KPA171202 (45 tRNAs)

Renibacterium salmoninarum ATCC 33209 (45 tRNAs) Rhodococcus RHA1 (52 tRNAs) Rubrobacter xylanophilus DSM 9941 (45 tRNAs)

Saccharopolyspora erythraea NRRL 2338 (49 tRNAs) Salinispora arenicola CNS-205 (52 tRNAs) Salinispora tropica CNB-440 (49 tRNAs)

Streptomyces avermitilis (68 tRNAs) Streptomyces coelicolor (63 tRNAs) Streptomyces griseus NBRC 13350 (65 tRNAs)

Thermobifida fusca YX (52 tRNAs) Tropheryma whipplei TW08 27 (51 tRNAs) Tropheryma whipplei Twist (50 tRNAs)

Alphaproteobacteria (82 genomes) [Top]

Acidiphilium cryptum JF-5 (48 tRNAs) Agrobacterium tumefaciens C58 Cereon (53 tRNAs) Agrobacterium tumefaciens C58 UWash (53 tRNAs)

Anaplasma marginale St Maries (37 tRNAs) Anaplasma phagocytophilum HZ (37 tRNAs) Azorhizobium caulinodans ORS 571 (52 tRNAs)

Bartonella bacilliformis KC583 (44 tRNAs) Bartonella henselae Houston-1 (43 tRNAs) Bartonella quintana Toulouse (42 tRNAs)

Bartonella tribocorum CIP 105476 (42 tRNAs) Beijerinckia indica ATCC 9039 (51 tRNAs) Bradyrhizobium BTAi1 (49 tRNAs)

Bradyrhizobium ORS278 (49 tRNAs) Bradyrhizobium japonicum (50 tRNAs) Brucella canis ATCC 23365 (55 tRNAs)

Brucella melitensis (54 tRNAs) Brucella melitensis biovar Abortus (55 tRNAs) Brucella ovis (53 tRNAs)

Brucella suis 1330 (55 tRNAs) Brucella suis ATCC 23445 (54 tRNAs) Candidatus Pelagibacter ubique HTCC1062 (32 tRNAs)

Caulobacter K31 (49 tRNAs) Caulobacter crescentus (51 tRNAs) Dinoroseobacter shibae DFL 12 (43 tRNAs)

Ehrlichia canis Jake (36 tRNAs) Ehrlichia chaffeensis Arkansas (37 tRNAs) Ehrlichia ruminantium Gardel (36 tRNAs)

Ehrlichia ruminantium Welgevonden UPSA (36 tRNAs) Ehrlichia ruminantium str. Welgevonden CIRAD (36 tRNAs) Erythrobacter litoralis HTCC2594 (43 tRNAs)

Gluconobacter oxydans 621H (55 tRNAs) Granulobacter bethesdensis CGDNIH1 (52 tRNAs) Hyphomonas neptunium ATCC 15444 (42 tRNAs)

Jannaschia CCS1 (41 tRNAs) Magnetospirillum magneticum AMB-1 (49 tRNAs) Maricaulis maris MCS10 (45 tRNAs)

Mesorhizobium BNC1 (50 tRNAs) Mesorhizobium loti (51 tRNAs) Methylobacterium 4 46 (62 tRNAs)

Methylobacterium extorquens PA1 (58 tRNAs) Methylobacterium radiotolerans JCM 2831 (58 tRNAs) Neorickettsia sennetsu Miyayama (33 tRNAs)

Nitrobacter hamburgensis X14 (50 tRNAs) Nitrobacter winogradskyi Nb-255 (47 tRNAs) Novosphingobium aromaticivorans DSM 12444 (55 tRNAs)

Ochrobactrum anthropi ATCC 49188 (57 tRNAs) Orientia tsutsugamushi Boryong (34 tRNAs) Paracoccus denitrificans PD1222 (52 tRNAs)

Parvibaculum lavamentivorans DS-1 (45 tRNAs) Rhizobium etli CFN 42 (50 tRNAs) Rhizobium leguminosarum bv viciae 3841 (52 tRNAs)

Rhodobacter sphaeroides 2 4 1 (52 tRNAs) Rhodobacter sphaeroides ATCC 17025 (54 tRNAs) Rhodobacter sphaeroides ATCC 17029 (55 tRNAs)

Rhodopseudomonas palustris BisA53 (48 tRNAs) Rhodopseudomonas palustris BisB18 (48 tRNAs) Rhodopseudomonas palustris BisB5 (50 tRNAs)

Rhodopseudomonas palustris CGA009 (48 tRNAs) Rhodopseudomonas palustris HaA2 (48 tRNAs) Rhodospirillum rubrum ATCC 11170 (55 tRNAs)

Rickettsia akari Hartford (33 tRNAs) Rickettsia bellii OSU 85-389 (34 tRNAs) Rickettsia bellii RML369-C (34 tRNAs)

Rickettsia canadensis McKiel (33 tRNAs) Rickettsia conorii (33 tRNAs) Rickettsia felis URRWXCal2 (33 tRNAs)

Rickettsia massiliae MTU5 (33 tRNAs) Rickettsia prowazekii (32 tRNAs) Rickettsia rickettsii Iowa (34 tRNAs)

Rickettsia rickettsii Sheila Smith (34 tRNAs) Rickettsia typhi wilmington (33 tRNAs) Roseobacter denitrificans OCh 114 (37 tRNAs)

Silicibacter TM1040 (61 tRNAs) Silicibacter pomeroyi DSS-3 (52 tRNAs) Sinorhizobium medicae WSM419 (53 tRNAs)

Sinorhizobium meliloti (54 tRNAs) Sphingomonas wittichii RW1 (48 tRNAs) Sphingopyxis alaskensis RB2256 (45 tRNAs)

Wolbachia endosymbiont of Brugia malayi TRS (34 tRNAs) Wolbachia endosymbiont of Drosophila melanogaster (34 tRNAs) Xanthobacter autotrophicus Py2 (50 tRNAs)

Zymomonas mobilis ZM4 (51 tRNAs)
Aquificae (4 genomes) [Top]

Aquifex aeolicus (43 tRNAs) Hydrogenivirga sp 128-5-R1-1 (56 tRNAs) Hydrogenobaculum Y04AAS1 (45 tRNAs)

Sulfurihydrogenibium YO3AOP1 (40 tRNAs)
Bacteroidetes (12 genomes) [Top]

Bacteroides fragilis NCTC 9434 (72 tRNAs) Bacteroides fragilis YCH46 (72 tRNAs) Bacteroides thetaiotaomicron VPI-5482 (70 tRNAs)

Bacteroides vulgatus ATCC 8482 (81 tRNAs) Candidatus Sulcia muelleri GWSS (31 tRNAs) Cytophaga hutchinsonii ATCC 33406 (38 tRNAs)

Flavobacterium johnsoniae UW101 (60 tRNAs) Flavobacterium psychrophilum JIP02 86 (49 tRNAs) Gramella forsetii KT0803 (44 tRNAs)

Parabacteroides distasonis ATCC 8503 (82 tRNAs) Porphyromonas gingivalis W83 (53 tRNAs) Salinibacter ruber DSM 13855 (44 tRNAs)

Betaproteobacteria (54 genomes) [Top]

Acidovorax JS42 (51 tRNAs) Acidovorax avenae citrulli AAC00-1 (53 tRNAs) Azoarcus BH72 (55 tRNAs)

Azoarcus sp EbN1 (58 tRNAs) Bordetella avium 197N (60 tRNAs) Bordetella bronchiseptica (55 tRNAs)

Bordetella parapertussis (53 tRNAs) Bordetella pertussis (51 tRNAs) Bordetella petrii (51 tRNAs)

Burkholderia 383 (67 tRNAs) Burkholderia ambifaria MC40 6 (67 tRNAs) Burkholderia cenocepacia AU 1054 (66 tRNAs)

Burkholderia cenocepacia HI2424 (66 tRNAs) Burkholderia cenocepacia MC0 3 (66 tRNAs) Burkholderia cepacia AMMD (68 tRNAs)

Burkholderia mallei ATCC 23344 (55 tRNAs) Burkholderia mallei NCTC 10229 (56 tRNAs) Burkholderia mallei NCTC 10247 (55 tRNAs)

Burkholderia mallei SAVP1 (55 tRNAs) Burkholderia pseudomallei 1106a (59 tRNAs) Burkholderia pseudomallei 1710b (59 tRNAs)

Burkholderia pseudomallei 668 (59 tRNAs) Burkholderia pseudomallei K96243 (60 tRNAs) Burkholderia thailandensis E264 (58 tRNAs)

Burkholderia vietnamiensis G4 (67 tRNAs) Burkholderia xenovorans LB400 (63 tRNAs) Chromobacterium violaceum (98 tRNAs)

Dechloromonas aromatica RCB (63 tRNAs) Delftia acidovorans SPH-1 (79 tRNAs) Herminiimonas arsenicoxydans (45 tRNAs)

Janthinobacterium Marseille (46 tRNAs) Leptothrix cholodnii SP 6 (50 tRNAs) Methylibium petroleiphilum PM1 (68 tRNAs)

Methylobacillus flagellatus KT (46 tRNAs) Neisseria gonorrhoeae FA 1090 (54 tRNAs) Neisseria meningitidis 053442 (59 tRNAs)

Neisseria meningitidis FAM18 (59 tRNAs) Neisseria meningitidis MC58 (59 tRNAs) Neisseria meningitidis Z2491 (58 tRNAs)

Nitrosomonas europaea (41 tRNAs) Nitrosomonas eutropha C71 (41 tRNAs) Nitrosospira multiformis ATCC 25196 (43 tRNAs)

Polaromonas JS666 (44 tRNAs) Polaromonas naphthalenivorans CJ2 (51 tRNAs) Polynucleobacter QLW-P1DMWA-1 (38 tRNAs)

Polynucleobacter necessarius STIR1 (37 tRNAs) Ralstonia eutropha H16 (53 tRNAs) Ralstonia eutropha JMP134 (65 tRNAs)

Ralstonia metallidurans CH34 (62 tRNAs) Ralstonia solanacearum (57 tRNAs) Rhodoferax ferrireducens DSM 15236 (45 tRNAs)

Rhodoferax ferrireducens T118 (45 tRNAs) Thiobacillus denitrificans ATCC 25259 (43 tRNAs) Verminephrobacter eiseniae EF01-2 (47 tRNAs)

Chlamydiae (12 genomes) [Top]

Chlamydia muridarum (37 tRNAs) Chlamydia trachomatis (37 tRNAs) Chlamydia trachomatis 434 Bu (37 tRNAs)

Chlamydia trachomatis A HAR-13 (37 tRNAs) Chlamydia trachomatis L2b UCH 1 proctitis (37 tRNAs) Chlamydophila abortus S26 3 (38 tRNAs)

Chlamydophila caviae (38 tRNAs) Chlamydophila felis Fe C-56 (38 tRNAs) Chlamydophila pneumoniae CWL029 (38 tRNAs)

Chlamydophila pneumoniae J138 (38 tRNAs) Chlamydophila pneumoniae TW 183 (38 tRNAs) Parachlamydia sp UWE25 (35 tRNAs)

Chlorobi (5 genomes) [Top]

Chlorobium chlorochromatii CaD3 (45 tRNAs) Chlorobium phaeobacteroides DSM 266 (47 tRNAs) Chlorobium tepidum TLS (50 tRNAs)

Pelodictyon luteolum DSM 273 (48 tRNAs) Prosthecochloris vibrioformis DSM 265 (45 tRNAs)
Chloroflexi (7 genomes) [Top]

Chloroflexus aurantiacus J 10 fl (47 tRNAs) Dehalococcoides BAV1 (46 tRNAs) Dehalococcoides CBDB1 (46 tRNAs)

Dehalococcoides ethenogenes 195 (46 tRNAs) Herpetosiphon aurantiacus ATCC 23779 (51 tRNAs) Roseiflexus RS-1 (48 tRNAs)

Roseiflexus castenholzii DSM 13941 (48 tRNAs)
Cyanobacteria (33 genomes) [Top]

Acaryochloris marina MBIC11017 (67 tRNAs) Anabaena variabilis ATCC 29413 (47 tRNAs) Crocosphaera watsonii WH8501 (37 tRNAs)

Cyanobacteria bacterium Yellowstone A-Prime (46 tRNAs) Cyanobacteria bacterium Yellowstone B-Prime (44 tRNAs) Cyanothece ATCC 51142 (41 tRNAs)

Gloeobacter violaceus (44 tRNAs) Microcystis aeruginosa NIES 843 (42 tRNAs) Nostoc sp (66 tRNAs)

Prochlorococcus marinus AS9601 (38 tRNAs) Prochlorococcus marinus CCMP1375 (39 tRNAs) Prochlorococcus marinus MED4 (37 tRNAs)

Prochlorococcus marinus MIT 9211 (40 tRNAs) Prochlorococcus marinus MIT 9215 (38 tRNAs) Prochlorococcus marinus MIT 9301 (37 tRNAs)

Prochlorococcus marinus MIT 9303 (43 tRNAs) Prochlorococcus marinus MIT 9312 (37 tRNAs) Prochlorococcus marinus MIT 9515 (37 tRNAs)

Prochlorococcus marinus MIT9313 (43 tRNAs) Prochlorococcus marinus NATL1A (38 tRNAs) Prochlorococcus marinus NATL2A (38 tRNAs)

Synechococcus CC9311 (43 tRNAs) Synechococcus CC9605 (43 tRNAs) Synechococcus CC9902 (44 tRNAs)

Synechococcus PCC 7002 (42 tRNAs) Synechococcus RCC307 (41 tRNAs) Synechococcus WH 7803 (43 tRNAs)

Synechococcus elongatus PCC 6301 (44 tRNAs) Synechococcus elongatus PCC 7942 (44 tRNAs) Synechococcus sp WH8102 (43 tRNAs)

Synechocystis PCC6803 (41 tRNAs) Thermosynechococcus elongatus (40 tRNAs) Trichodesmium erythraeum IMS101 (38 tRNAs)

Deinococcus-Thermus (4 genomes) [Top]

Deinococcus geothermalis DSM 11300 (48 tRNAs) Deinococcus radiodurans (49 tRNAs) Thermus thermophilus HB27 (47 tRNAs)

Thermus thermophilus HB8 (47 tRNAs)
Deltaproteobacteria (18 genomes) [Top]

Anaeromyxobacter Fw109-5 (48 tRNAs) Anaeromyxobacter dehalogenans 2CP-C (48 tRNAs) Bdellovibrio bacteriovorus (36 tRNAs)

Candidatus Desulfococcus oleovorans Hxd3 (46 tRNAs) Desulfotalea psychrophila LSv54 (63 tRNAs) Desulfovibrio desulfuricans G20 (65 tRNAs)

Desulfovibrio vulgaris DP4 (66 tRNAs) Desulfovibrio vulgaris Hildenborough (66 tRNAs) Geobacter lovleyi SZ (44 tRNAs)

Geobacter metallireducens GS-15 (48 tRNAs) Geobacter sulfurreducens (48 tRNAs) Geobacter uraniumreducens Rf4 (48 tRNAs)

Lawsonia intracellularis PHE MN1-00 (43 tRNAs) Myxococcus xanthus DK 1622 (62 tRNAs) Pelobacter carbinolicus (53 tRNAs)

Pelobacter propionicus DSM 2379 (53 tRNAs) Syntrophobacter fumaroxidans MPOB (49 tRNAs) Syntrophus aciditrophicus SB (48 tRNAs)

Epsilonproteobacteria (20 genomes) [Top]

Arcobacter butzleri RM4018 (53 tRNAs) Campylobacter concisus 13826 (46 tRNAs) Campylobacter curvus 525 92 (46 tRNAs)

Campylobacter fetus 82-40 (43 tRNAs) Campylobacter hominis ATCC BAA-381 (43 tRNAs) Campylobacter jejuni (43 tRNAs)

Campylobacter jejuni 81-176 (43 tRNAs) Campylobacter jejuni 81116 (43 tRNAs) Campylobacter jejuni RM1221 (43 tRNAs)

Campylobacter jejuni doylei 269 97 (43 tRNAs) Helicobacter acinonychis Sheeba (36 tRNAs) Helicobacter hepaticus (36 tRNAs)

Helicobacter pylori 26695 (36 tRNAs) Helicobacter pylori G27 (36 tRNAs) Helicobacter pylori HPAG1 (36 tRNAs)

Helicobacter pylori J99 (36 tRNAs) Nitratiruptor SB155-2 (45 tRNAs) Sulfurovum NBC37-1 (43 tRNAs)

Thiomicrospira denitrificans ATCC 33889 (44 tRNAs) Wolinella succinogenes (40 tRNAs)
Firmicutes (125 genomes) [Top]

Alkaliphilus metalliredigens QYMF (103 tRNAs) Alkaliphilus oremlandii OhILAs (85 tRNAs) Bacillus amyloliquefaciens FZB42 (89 tRNAs)

Bacillus anthracis A2012 (32 tRNAs) Bacillus anthracis Ames (95 tRNAs) Bacillus anthracis Ames 0581 (95 tRNAs)

Bacillus anthracis str Sterne (95 tRNAs) Bacillus cereus ATCC 10987 (97 tRNAs) Bacillus cereus ATCC14579 (107 tRNAs)

Bacillus cereus ZK (96 tRNAs) Bacillus cereus cytotoxis NVH 391-98 (106 tRNAs) Bacillus clausii KSM-K16 (75 tRNAs)

Bacillus halodurans (78 tRNAs) Bacillus licheniformis ATCC 14580 (71 tRNAs) Bacillus licheniformis DSM 13 (72 tRNAs)

Bacillus pumilus SAFR-032 (70 tRNAs) Bacillus subtilis (86 tRNAs) Bacillus thuringiensis Al Hakam (104 tRNAs)

Bacillus thuringiensis konkukian (105 tRNAs) Bacillus weihenstephanensis KBAB4 (108 tRNAs) Caldicellulosiruptor saccharolyticus DSM 8903 (46 tRNAs)

Candidatus Desulforudis audaxviator MP104C (44 tRNAs) Carboxydothermus hydrogenoformans Z-2901 (48 tRNAs) Clostridium acetobutylicum (72 tRNAs)

Clostridium beijerinckii NCIMB 8052 (94 tRNAs) Clostridium botulinum A (78 tRNAs) Clostridium botulinum A ATCC 19397 (80 tRNAs)

Clostridium botulinum A Hall (80 tRNAs) Clostridium botulinum A3 Loch Maree (80 tRNAs) Clostridium botulinum B Eklund 17B (77 tRNAs)

Clostridium botulinum B1 Okra (81 tRNAs) Clostridium botulinum F Langeland (80 tRNAs) Clostridium difficile 630 (87 tRNAs)

Clostridium kluyveri DSM 555 (60 tRNAs) Clostridium novyi NT (81 tRNAs) Clostridium perfringens (95 tRNAs)

Clostridium perfringens ATCC 13124 (92 tRNAs) Clostridium phytofermentans ISDg (59 tRNAs) Clostridium tetani E88 (54 tRNAs)

Clostridium thermocellum ATCC 27405 (56 tRNAs) Desulfitobacterium hafniense Y51 (57 tRNAs) Desulfotomaculum reducens MI-1 (69 tRNAs)

Enterococcus faecalis V583 (67 tRNAs) Exiguobacterium sibiricum 255 15 (69 tRNAs) Finegoldia magna ATCC 29328 (47 tRNAs)

Geobacillus kaustophilus HTA426 (87 tRNAs) Geobacillus thermodenitrificans NG80-2 (87 tRNAs) Heliobacterium modesticaldum Ice1 (108 tRNAs)

Lactobacillus acidophilus NCFM (61 tRNAs) Lactobacillus brevis ATCC 367 (63 tRNAs) Lactobacillus casei ATCC 334 (59 tRNAs)

Lactobacillus delbrueckii bulgaricus (95 tRNAs) Lactobacillus delbrueckii bulgaricus ATCC BAA-365 (98 tRNAs) Lactobacillus fermentum IFO 3956 (57 tRNAs)

Lactobacillus gasseri ATCC 33323 (75 tRNAs) Lactobacillus helveticus DPC 4571 (61 tRNAs) Lactobacillus johnsonii NCC 533 (78 tRNAs)

Lactobacillus plantarum (70 tRNAs) Lactobacillus sakei 23K (63 tRNAs) Lactobacillus salivarius UCC118 (76 tRNAs)

Lactococcus lactis (61 tRNAs) Lactococcus lactis cremoris MG1363 (62 tRNAs) Lactococcus lactis cremoris SK11 (61 tRNAs)

Leuconostoc citreum KM20 (69 tRNAs) Leuconostoc mesenteroides ATCC 8293 (70 tRNAs) Listeria innocua (66 tRNAs)

Listeria monocytogenes (67 tRNAs) Listeria monocytogenes 4b F2365 (67 tRNAs) Listeria welshimeri serovar 6b SLCC5334 (66 tRNAs)

Lysinibacillus sphaericus C3 41 (85 tRNAs) Moorella thermoacetica ATCC 39073 (50 tRNAs) Oceanobacillus iheyensis (69 tRNAs)

Oenococcus oeni PSU-1 (43 tRNAs) Pediococcus pentosaceus ATCC 25745 (55 tRNAs) Pelotomaculum thermopropionicum SI (50 tRNAs)

Staphylococcus aureus COL (52 tRNAs) Staphylococcus aureus JH1 (59 tRNAs) Staphylococcus aureus JH9 (58 tRNAs)

Staphylococcus aureus MW2 (59 tRNAs) Staphylococcus aureus Mu3 (59 tRNAs) Staphylococcus aureus Mu50 (58 tRNAs)

Staphylococcus aureus N315 (61 tRNAs) Staphylococcus aureus NCTC 8325 (59 tRNAs) Staphylococcus aureus Newman (59 tRNAs)

Staphylococcus aureus RF122 (60 tRNAs) Staphylococcus aureus USA300 TCH1516 (59 tRNAs) Staphylococcus aureus aureus MRSA252 (59 tRNAs)

Staphylococcus aureus aureus MSSA476 (59 tRNAs) Staphylococcus epidermidis ATCC 12228 (58 tRNAs) Staphylococcus epidermidis RP62A (59 tRNAs)

Staphylococcus haemolyticus (60 tRNAs) Staphylococcus saprophyticus (58 tRNAs) Streptococcus agalactiae 2603 (80 tRNAs)

Streptococcus agalactiae A909 (80 tRNAs) Streptococcus agalactiae NEM316 (80 tRNAs) Streptococcus gordonii Challis substr CH1 (59 tRNAs)

Streptococcus mutans (64 tRNAs) Streptococcus pneumoniae CGSP14 (57 tRNAs) Streptococcus pneumoniae D39 (58 tRNAs)

Streptococcus pneumoniae Hungary19A 6 (58 tRNAs) Streptococcus pneumoniae R6 (58 tRNAs) Streptococcus pneumoniae TIGR4 (58 tRNAs)

Streptococcus pyogenes M1 GAS (60 tRNAs) Streptococcus pyogenes MGAS10270 (67 tRNAs) Streptococcus pyogenes MGAS10394 (67 tRNAs)

Streptococcus pyogenes MGAS10750 (67 tRNAs) Streptococcus pyogenes MGAS2096 (67 tRNAs) Streptococcus pyogenes MGAS315 (67 tRNAs)

Streptococcus pyogenes MGAS5005 (67 tRNAs) Streptococcus pyogenes MGAS6180 (67 tRNAs) Streptococcus pyogenes MGAS8232 (67 tRNAs)

Streptococcus pyogenes MGAS9429 (67 tRNAs) Streptococcus pyogenes Manfredo (66 tRNAs) Streptococcus pyogenes SSI-1 (57 tRNAs)

Streptococcus sanguinis SK36 (61 tRNAs) Streptococcus suis 05ZYH33 (56 tRNAs) Streptococcus suis 98HAH33 (56 tRNAs)

Streptococcus thermophilus CNRZ1066 (67 tRNAs) Streptococcus thermophilus LMD-9 (67 tRNAs) Streptococcus thermophilus LMG 18311 (67 tRNAs)

Symbiobacterium thermophilum IAM14863 (97 tRNAs) Syntrophomonas wolfei Goettingen (46 tRNAs) Thermoanaerobacter X514 (54 tRNAs)

Thermoanaerobacter pseudethanolicus ATCC 33223 (56 tRNAs) Thermoanaerobacter tengcongensis (55 tRNAs)
Fusobacteria (1 genome) [Top]

Fusobacterium nucleatum (47 tRNAs)
Gammaproteobacteria (161 genomes) [Top]

Acinetobacter baumannii (72 tRNAs) Acinetobacter baumannii ATCC 17978 (70 tRNAs) Acinetobacter baumannii AYE (72 tRNAs)

Acinetobacter baumannii SDF (64 tRNAs) Acinetobacter sp ADP1 (76 tRNAs) Actinobacillus pleuropneumoniae L20 (61 tRNAs)

Actinobacillus pleuropneumoniae serovar 3 JL03 (62 tRNAs) Actinobacillus succinogenes 130Z (59 tRNAs) Aeromonas hydrophila ATCC 7966 (125 tRNAs)

Aeromonas salmonicida A449 (108 tRNAs) Alcanivorax borkumensis SK2 (42 tRNAs) Alkalilimnicola ehrlichei MLHE-1 (48 tRNAs)

Baumannia cicadellinicola Homalodisca coagulata (39 tRNAs) Blochmannia floridanus (37 tRNAs) Buchnera aphidicola (31 tRNAs)

Buchnera aphidicola Cc Cinara cedri (30 tRNAs) Buchnera aphidicola Sg (30 tRNAs) Buchnera sp (31 tRNAs)

Candidatus Blochmannia floridanus (37 tRNAs) Candidatus Blochmannia pennsylvanicus BPEN (39 tRNAs) Candidatus Carsonella ruddii PV (24 tRNAs)

Candidatus Ruthia magnifica Cm Calyptogena magnifica (36 tRNAs) Candidatus Vesicomyosocius okutanii HA (35 tRNAs) Chromohalobacter salexigens DSM 3043 (69 tRNAs)

Citrobacter koseri ATCC BAA-895 (81 tRNAs) Colwellia psychrerythraea 34H (88 tRNAs) Coxiella burnetii (42 tRNAs)

Coxiella burnetii Dugway 7E9-12 (42 tRNAs) Coxiella burnetii RSA 331 (42 tRNAs) Dichelobacter nodosus VCS1703A (45 tRNAs)

Enterobacter 638 (82 tRNAs) Enterobacter sakazakii ATCC BAA-894 (81 tRNAs) Erwinia carotovora atroseptica SCRI1043 (76 tRNAs)

Escherichia coli 536 (79 tRNAs) Escherichia coli APEC O1 (94 tRNAs) Escherichia coli C ATCC 8739 (85 tRNAs)

Escherichia coli CFT073 (87 tRNAs) Escherichia coli DH10B (86 tRNAs) Escherichia coli E24377A (87 tRNAs)

Escherichia coli HS (86 tRNAs) Escherichia coli K12 (86 tRNAs) Escherichia coli O157H7 (101 tRNAs)

Escherichia coli O157H7 EDL933 (98 tRNAs) Escherichia coli SECEC SMS 3 5 (88 tRNAs) Escherichia coli UTI89 (87 tRNAs)

Francisella philomiragia ATCC 25017 (39 tRNAs) Francisella tularensis FSC 198 (38 tRNAs) Francisella tularensis WY96-3418 (38 tRNAs)

Francisella tularensis holarctica (38 tRNAs) Francisella tularensis holarctica FTA (38 tRNAs) Francisella tularensis holarctica OSU18 (38 tRNAs)

Francisella tularensis mediasiatica FSC147 (38 tRNAs) Francisella tularensis novicida U112 (38 tRNAs) Francisella tularensis tularensis (38 tRNAs)

Haemophilus ducreyi 35000HP (47 tRNAs) Haemophilus influenzae (56 tRNAs) Haemophilus influenzae 86 028NP (57 tRNAs)

Haemophilus influenzae PittEE (57 tRNAs) Haemophilus influenzae PittGG (54 tRNAs) Haemophilus somnus 129PT (49 tRNAs)

Haemophilus somnus 2336 (48 tRNAs) Hahella chejuensis KCTC 2396 (67 tRNAs) Halorhodospira halophila SL1 (46 tRNAs)

Idiomarina loihiensis L2TR (56 tRNAs) Klebsiella pneumoniae MGH 78578 (85 tRNAs) Legionella pneumophila Corby (44 tRNAs)

Legionella pneumophila Lens (43 tRNAs) Legionella pneumophila Paris (43 tRNAs) Legionella pneumophila Philadelphia 1 (43 tRNAs)

Mannheimia succiniciproducens MBEL55E (59 tRNAs) Marinobacter aquaeolei VT8 (51 tRNAs) Marinomonas MWYL1 (83 tRNAs)

Methylococcus capsulatus Bath (46 tRNAs) Nitrosococcus oceani ATCC 19707 (45 tRNAs) Pasteurella multocida (56 tRNAs)

Photobacterium profundum SS9 (167 tRNAs) Photorhabdus luminescens (84 tRNAs) Pseudoalteromonas atlantica T6c (62 tRNAs)

Pseudoalteromonas haloplanktis TAC125 (106 tRNAs) Pseudomonas aeruginosa (62 tRNAs) Pseudomonas aeruginosa PA7 (63 tRNAs)

Pseudomonas aeruginosa UCBPP-PA14 (61 tRNAs) Pseudomonas entomophila L48 (77 tRNAs) Pseudomonas fluorescens Pf-5 (70 tRNAs)

Pseudomonas fluorescens PfO-1 (72 tRNAs) Pseudomonas mendocina ymp (65 tRNAs) Pseudomonas putida F1 (75 tRNAs)

Pseudomonas putida GB 1 (74 tRNAs) Pseudomonas putida KT2440 (74 tRNAs) Pseudomonas putida W619 (74 tRNAs)

Pseudomonas stutzeri A1501 (59 tRNAs) Pseudomonas syringae phaseolicola 1448A (62 tRNAs) Pseudomonas syringae pv B728a (64 tRNAs)

Pseudomonas syringae tomato DC3000 (64 tRNAs) Psychrobacter PRwf-1 (57 tRNAs) Psychrobacter arcticum 273-4 (48 tRNAs)

Psychrobacter cryohalolentis K5 (48 tRNAs) Psychromonas ingrahamii 37 (85 tRNAs) Saccharophagus degradans 2-40 (41 tRNAs)

Salmonella enterica Choleraesuis (84 tRNAs) Salmonella enterica Paratypi ATCC 9150 (80 tRNAs) Salmonella enterica arizonae serovar 62 z4 z23 (83 tRNAs)

Salmonella enterica serovar Paratyphi B SPB7 (84 tRNAs) Salmonella typhi (78 tRNAs) Salmonella typhi Ty2 (77 tRNAs)

Salmonella typhimurium LT2 (84 tRNAs) Serratia proteamaculans 568 (83 tRNAs) Shewanella ANA-3 (102 tRNAs)

Shewanella MR-4 (100 tRNAs) Shewanella MR-7 (102 tRNAs) Shewanella W3-18-1 (100 tRNAs)

Shewanella amazonensis SB2B (101 tRNAs) Shewanella baltica OS155 (117 tRNAs) Shewanella baltica OS185 (105 tRNAs)

Shewanella baltica OS195 (103 tRNAs) Shewanella denitrificans OS217 (93 tRNAs) Shewanella frigidimarina NCIMB 400 (96 tRNAs)

Shewanella halifaxensis HAW EB4 (124 tRNAs) Shewanella loihica PV-4 (94 tRNAs) Shewanella oneidensis (100 tRNAs)

Shewanella pealeana ATCC 700345 (142 tRNAs) Shewanella putrefaciens CN-32 (101 tRNAs) Shewanella sediminis HAW-EB3 (125 tRNAs)

Shewanella woodyi ATCC 51908 (125 tRNAs) Shigella boydii CDC 3083 94 (97 tRNAs) Shigella boydii Sb227 (90 tRNAs)

Shigella dysenteriae (83 tRNAs) Shigella flexneri 2a (95 tRNAs) Shigella flexneri 2a 2457T (99 tRNAs)

Shigella flexneri 5 8401 (96 tRNAs) Shigella sonnei Ss046 (96 tRNAs) Sodalis glossinidius morsitans (69 tRNAs)

Thiomicrospira crunogena XCL-2 (43 tRNAs) Vibrio cholerae (98 tRNAs) Vibrio cholerae MO10 (62 tRNAs)

Vibrio cholerae O395 (96 tRNAs) Vibrio fischeri ES114 (119 tRNAs) Vibrio harveyi ATCC BAA-1116 (121 tRNAs)

Vibrio parahaemolyticus (126 tRNAs) Vibrio vulnificus CMCP6 (111 tRNAs) Vibrio vulnificus YJ016 (112 tRNAs)

Wigglesworthia brevipalpis (34 tRNAs) Xanthomonas campestris 8004 (53 tRNAs) Xanthomonas campestris vesicatoria 85-10 (56 tRNAs)

Xanthomonas citri (54 tRNAs) Xanthomonas oryzae KACC10331 (53 tRNAs) Xanthomonas oryzae MAFF 311018 (53 tRNAs)

Xylella fastidiosa (49 tRNAs) Xylella fastidiosa M12 (50 tRNAs) Xylella fastidiosa M23 (50 tRNAs)

Xylella fastidiosa Temecula1 (49 tRNAs) Yersinia enterocolitica 8081 (79 tRNAs) Yersinia pestis Angola (68 tRNAs)

Yersinia pestis Antiqua (66 tRNAs) Yersinia pestis CO92 (68 tRNAs) Yersinia pestis Nepal516 (70 tRNAs)

Yersinia pestis Pestoides F (70 tRNAs) Yersinia pestis biovar Mediaevails (71 tRNAs) Yersinia pseudotuberculosis IP 31758 (82 tRNAs)

Yersinia pseudotuberculosis IP32953 (82 tRNAs) Yersinia pseudotuberculosis YPIII (80 tRNAs)
Magnetococcus (1 genome) [Top]

Magnetococcus MC-1 (45 tRNAs)
Planctomycetes (1 genome) [Top]

Pirellula sp (70 tRNAs)
Spirochaetes (9 genomes) [Top]

Borrelia afzelii PKo (32 tRNAs) Borrelia burgdorferi (32 tRNAs) Borrelia garinii PBi (32 tRNAs)

Leptospira borgpetersenii serovar Hardjo-bovis JB197 (37 tRNAs) Leptospira borgpetersenii serovar Hardjo-bovis L550 (37 tRNAs) Leptospira interrogans serovar Copenhageni (25 tRNAs)

Leptospira interrogans serovar Lai (37 tRNAs) Treponema denticola ATCC 35405 (41 tRNAs) Treponema pallidum (45 tRNAs)

Tenericutes (19 genomes) [Top]

Acholeplasma laidlawii PG 8A (36 tRNAs) Aster yellows witches-broom phytoplasma AYWB (32 tRNAs) Mesoplasma florum L1 (28 tRNAs)

Mycoplasma agalactiae PG2 (33 tRNAs) Mycoplasma capricolum ATCC 27343 (29 tRNAs) Mycoplasma gallisepticum (31 tRNAs)

Mycoplasma genitalium (35 tRNAs) Mycoplasma hyopneumoniae 232 (29 tRNAs) Mycoplasma hyopneumoniae 7448 (29 tRNAs)

Mycoplasma hyopneumoniae J (29 tRNAs) Mycoplasma mobile 163K (27 tRNAs) Mycoplasma mycoides (29 tRNAs)

Mycoplasma penetrans (29 tRNAs) Mycoplasma pneumoniae (36 tRNAs) Mycoplasma pulmonis (28 tRNAs)

Mycoplasma synoviae 53 (33 tRNAs) Onion yellows phytoplasma (32 tRNAs) Ureaplasma parvum serovar 3 ATCC 27815 (29 tRNAs)

Ureaplasma urealyticum (29 tRNAs)
Thermotogae (6 genomes) [Top]

Fervidobacterium nodosum Rt17-B1 (50 tRNAs) Petrotoga mobilis SJ95 (48 tRNAs) Thermosipho melanesiensis BI429 (50 tRNAs)

Thermotoga lettingae TMO (46 tRNAs) Thermotoga maritima (46 tRNAs) Thermotoga petrophila RKU-1 (46 tRNAs)

Verrucomicrobia (1 genome) [Top]

Opitutus terrae PB90 1 (59 tRNAs)
ssDNA viruses (1 genome) [Top]

Chlamydophila pneumoniae AR39 (38 tRNAs)
Number of Genomes in Bacteria: 629

[Top]

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.