GtRNAdb

tRNAscan-SE Analysis of Aeropyrum pernix

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tRNA Gene Summary





tRNAs Decoding Standard 20 AA46
Selenocysteine tRNAs (TCA)0
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
0
Predicted pseudogenes0
Total tRNAs46


Intron Summary

tRNAs with introns
14
Pro
GGG
1
Pro
CGG
1
Thr
CGT
1
Thr
TGT
1
Ser
CGA
1
Arg
TCT
1
Lys
CTT
1
Lys
TTT
1
Asp
GTC
1
Met
CAT
2
Tyr
GTA
1
Cys
GCA
1
Trp
CCA
1


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
 
GGC
1
CGC
1
TGC
1
3
GlyACC
 
GCC
1
CCC
1
TCC
1
3
ProAGG
 
GGG
1
CGG
1
TGG
1
3
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ValAAC
 
GAC
1
CAC
1
TAC
1
3

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
ArgACG
 
GCG
1
CCG
1
TCG
1
 
 
 
 
CCT
1
TCT
1
5
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
5

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
1
 
 
 
 
1
AsnATT
 
GTT
1
 
 
 
 
1
Lys 
 
 
 
CTT
1
TTT
1
2
AspATC
 
GTC
1
 
 
 
 
1
Glu 
 
 
 
CTC
1
TTC
1
2
HisATG
 
GTG
1
 
 
 
 
1
Gln 
 
 
 
CTG
1
TTG
1
2

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
 
GAT
1
 
 
TAT
 
1
Met 
 
 
 
CAT
3
 
 
3
TyrATA
 
GTA
1
 
 
 
 
1
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
 
GCA
1
 
 
 
 
1
Trp 
 
 
 
CCA
1
 
 
1
SelCys 
 
 
 
 
 
TCA
 
0

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.