GtRNAdb

tRNAscan-SE Analysis of Arabidopsis thaliana (Feb 2004)

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tRNA Gene Summary





tRNAs Decoding Standard 20 AA630
Selenocysteine tRNAs (TCA)0
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
1
Predicted pseudogenes8
Total tRNAs639


Intron Summary

tRNAs with introns
83
Ser
GCT
2
Met
CAT
11
Tyr
GTA
70


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
16
GGC
 
CGC
7
TGC
10
33
GlyACC
1
GCC
23
CCC
5
TCC
12
41
ProAGG
16
GGG
 
CGG
5
TGG
45
66
ThrAGT
10
GGT
 
CGT
6
TGT
8
24
ValAAC
15
GAC
 
CAC
8
TAC
7
30

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
37
GGA
1
CGA
4
TGA
9
ACT
 
GCT
13
 
 
 
 
64
ArgACG
9
GCG
 
CCG
4
TCG
6
 
 
 
 
CCT
8
TCT
9
36
LeuAAG
12
GAG
1
CAG
3
TAG
10
 
 
 
 
CAA
10
TAA
6
42

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
16
 
 
 
 
16
AsnATT
 
GTT
16
 
 
 
 
16
Lys 
 
 
 
CTT
18
TTT
13
31
AspATC
 
GTC
26
 
 
 
 
26
Glu 
 
 
 
CTC
13
TTC
12
25
HisATG
 
GTG
10
 
 
 
 
10
Gln 
 
 
 
CTG
9
TTG
8
17

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
19
GAT
 
 
 
TAT
5
24
Met 
 
 
 
CAT
24
 
 
24
TyrATA
 
GTA
76
 
 
 
 
76
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
 
GCA
15
 
 
 
 
15
Trp 
 
 
 
CCA
14
 
 
14
SelCys 
 
 
 
 
 
TCA
 
0

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.