Genomic tRNA Database: Caenorhabditis briggsae (cb3 Jan 2007)

tRNAscan-SE Analysis of Caenorhabditis briggsae (cb3 Jan 2007)

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>> Genome Seq

tRNA Gene Summary



tRNAs Decoding Standard 20 AA 772
 Selenocysteine tRNAs (TCA) 2
 Possible suppressor tRNAs (CTA,TTA) 0
 tRNAs with undetermined 
 or unknown isotypes 3
 Predicted pseudogenes 181
 Total tRNAs 958
 
 
Intron Summary tRNAs with introns 
 41 Gly 
 GCC 
 1 Leu 
 TAG 
 1 Leu 
 CAA 
 10 Phe 
 GAA 
 1 Asn 
 ATT 
 1 Ile 
 TAT 
 5 Tyr 
 GTA 
 22

Four Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Ala AGC 
 30 GGC 
   CGC 
 7 TGC 
 14 51
 Gly ACC 
   GCC 
 20 CCC 
 6 TCC 
 47 73
 Pro AGG 
 6 GGG 
 1 CGG 
 4 TGG 
 40 51
 Thr AGT 
 22 GGT 
   CGT 
 9 TGT 
 11 42
 Val AAC 
 26 GAC 
   CAC 
 6 TAC 
 6 38  Six Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Ser AGA 
 16 GGA 
   CGA 
 8 TGA 
 10 ACT 
   GCT 
 9   
     
   43
 Arg ACG 
 23 GCG 
   CCG 
 2 TCG 
 11   
     
   CCT 
 2 TCT 
 10 48
 Leu AAG 
 27 GAG 
   CAG 
 7 TAG 
 6   
     
   CAA 
 11 TAA 
 6 57
 Two Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Phe AAA 
   GAA 
 22   
     
   22
 Asn ATT 
   GTT 
 25   
     
   25
 Lys   
     
   CTT 
 42 TTT 
 16 58
 Asp ATC 
   GTC 
 36   
     
   36
 Glu   
     
   CTC 
 31 TTC 
 19 50
 His ATG 
   GTG 
 21   
     
   21
 Gln   
     
   CTG 
 10 TTG 
 25 35  Two Box & Other tRNA Sets Isotype tRNA Count by Anticodon Total
 Ile AAT 
 21 GAT 
     
   TAT 
 24 45
 Met   
     
   CAT 
 24   
   24
 Tyr ATA 
   GTA 
 22   
     
   22
 Supres   
     
   CTA 
   TTA 
   0
 Cys ACA 
   GCA 
 17   
     
   17
 Trp   
     
   CCA 
 14   
   14
 SelCys   
     
     
   TCA 
 2 2

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.