Genomic tRNA Database: Caenorhabditis elegans (Jan 2007)

tRNAscan-SE Analysis of Caenorhabditis elegans (Jan 2007)

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>> Genome Seq

tRNA Gene Summary



tRNAs Decoding Standard 20 AA 605
 Selenocysteine tRNAs (TCA) 1
 Possible suppressor tRNAs (CTA,TTA) 0
 tRNAs with undetermined 
 or unknown isotypes 3
 Predicted pseudogenes 211
 Total tRNAs 820
 
 
Intron Summary tRNAs with introns 
 31 Leu 
 CAA 
 7 Asp 
 ATC 
 1 Ile 
 TAT 
 4 Tyr 
 GTA 
 19

Four Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Ala AGC 
 22 GGC 
   CGC 
 4 TGC 
 8 34
 Gly ACC 
   GCC 
 16 CCC 
 3 TCC 
 36 55
 Pro AGG 
 6 GGG 
   CGG 
 4 TGG 
 32 42
 Thr AGT 
 17 GGT 
   CGT 
 7 TGT 
 10 34
 Val AAC 
 19 GAC 
   CAC 
 6 TAC 
 5 30  Six Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Ser AGA 
 15 GGA 
   CGA 
 6 TGA 
 9 ACT 
   GCT 
 9   
     
   39
 Arg ACG 
 19 GCG 
 1 CCG 
 2 TCG 
 10   
     
   CCT 
 4 TCT 
 8 44
 Leu AAG 
 19 GAG 
   CAG 
 6 TAG 
 3   
     
   CAA 
 7 TAA 
 4 39
 Two Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Phe AAA 
   GAA 
 14   
     
   14
 Asn ATT 
   GTT 
 20   
     
   20
 Lys   
     
   CTT 
 31 TTT 
 15 46
 Asp ATC 
   GTC 
 27   
     
   27
 Glu   
     
   CTC 
 24 TTC 
 17 41
 His ATG 
 1 GTG 
 19   
     
   20
 Gln   
     
   CTG 
 7 TTG 
 20 27  Two Box & Other tRNA Sets Isotype tRNA Count by Anticodon Total
 Ile AAT 
 21 GAT 
     
   TAT 
 8 29
 Met   
     
   CAT 
 20   
   20
 Tyr ATA 
   GTA 
 19   
     
   19
 Supres   
     
   CTA 
   TTA 
   0
 Cys ACA 
   GCA 
 13   
     
   13
 Trp   
     
   CCA 
 12   
   12
 SelCys   
     
     
   TCA 
 1 1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.