Genomic tRNA Database: Canis familiaris (dog) (May 2005)

tRNAscan-SE Analysis of Canis familiaris (dog) (May 2005)

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>> Genome Seq

tRNA Gene Summary

tRNA-derived SINEs are found in a number of eukaryotes especially mammalian genomes. After manual inspection and analysis, we apply the following filter to this genome for eliminating these tRNA-derived elements from true tRNAs. If the tRNA candidates have hits in both tRNAscan and Eufind first-pass scanners, we use a combination of at least 20 bits COVE score, 10 bits HMM score, and 5 bits 2' structure score to define a true tRNA. If the tRNA candidates only have hits in one of the first-pass scanners, the threshold of a true tRNA will be 55 bits COVE score.



tRNAs Decoding Standard 20 AA 898
 Selenocysteine tRNAs (TCA) 1
 Possible suppressor tRNAs (CTA,TTA) 6
 tRNAs with undetermined 
 or unknown isotypes 1
 Predicted pseudogenes 0
 Total tRNAs 906
 
 
Intron Summary tRNAs with introns 
 68 Ala 
 AGC 
 1 Pro 
 TGG 
 1 Arg 
 TCG 
 1 Arg 
 CCT 
 1 Arg 
 TCT 
 4 Leu 
 CAG 
 1 Leu 
 CAA 
 4 Lys 
 CTT 
 33 Lys 
 TTT 
 2 Glu 
 CTC 
 2 Glu 
 TTC 
 1 Gln 
 CTG 
 1 Gln 
 TTG 
 3 Ile 
 TAT 
 5 Tyr 
 GTA 
 8

Four Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Ala AGC 
 14 GGC 
   CGC 
 3 TGC 
 11 28
 Gly ACC 
   GCC 
 10 CCC 
 9 TCC 
 11 30
 Pro AGG 
 8 GGG 
   CGG 
 4 TGG 
 8 20
 Thr AGT 
 8 GGT 
   CGT 
 5 TGT 
 4 17
 Val AAC 
 6 GAC 
   CAC 
 8 TAC 
 5 19  Six Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Ser AGA 
 10 GGA 
   CGA 
 7 TGA 
 5 ACT 
   GCT 
 8   
     
   30
 Arg ACG 
 6 GCG 
   CCG 
 4 TCG 
 15   
     
   CCT 
 29 TCT 
 9 63
 Leu AAG 
 4 GAG 
   CAG 
 7 TAG 
 4   
     
   CAA 
 4 TAA 
 4 23
 Two Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Phe AAA 
   GAA 
 10   
     
   10
 Asn ATT 
 1 GTT 
 21   
     
   22
 Lys   
     
   CTT 
 406 TTT 
 34 440
 Asp ATC 
 2 GTC 
 13   
     
   15
 Glu   
     
   CTC 
 22 TTC 
 15 37
 His ATG 
   GTG 
 9   
     
   9
 Gln   
     
   CTG 
 20 TTG 
 43 63  Two Box & Other tRNA Sets Isotype tRNA Count by Anticodon Total
 Ile AAT 
 9 GAT 
     
   TAT 
 5 14
 Met   
     
   CAT 
 22   
   22
 Tyr ATA 
   GTA 
 9   
     
   9
 Supres   
     
   CTA 
 3 TTA 
 3 6
 Cys ACA 
   GCA 
 21   
     
   21
 Trp   
     
   CCA 
 6   
   6
 SelCys   
     
     
   TCA 
 1 1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.