Genomic tRNA Database: Felis catus (cat) (Broad Release 3 May 2005)

tRNAscan-SE Analysis of Felis catus (cat) (Broad Release 3 May 2005)

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>> Genome Seq

tRNA Gene Summary

tRNA-derived SINEs are found in a number of eukaryotes especially mammalian genomes. After manual inspection and analysis, we apply the following filter to this genome for eliminating these tRNA-derived elements from true tRNAs. If the tRNA candidates have hits in both tRNAscan and Eufind first-pass scanners, we use a combination of at least 20 bits COVE score, 10 bits HMM score, and 5 bits 2' structure score to define a true tRNA. If the tRNA candidates only have hits in one of the first-pass scanners, the threshold of a true tRNA will be 55 bits COVE score.



tRNAs Decoding Standard 20 AA 2344
 Selenocysteine tRNAs (TCA) 17
 Possible suppressor tRNAs (CTA,TTA) 30
 tRNAs with undetermined 
 or unknown isotypes 2
 Predicted pseudogenes 0
 Total tRNAs 2393
 
 
Intron Summary tRNAs with introns 
 280 Ala 
 CGC 
 1 Gly 
 CCC 
 2 Pro 
 GGG 
 1 Pro 
 TGG 
 3 Thr 
 CGT 
 1 Ser 
 TGA 
 2 Arg 
 TCG 
 59 Arg 
 CCT 
 6 Arg 
 TCT 
 3 Leu 
 CAA 
 5 Leu 
 TAA 
 1 Asn 
 ATT 
 1 Asn 
 GTT 
 2 Lys 
 CTT 
 119 Lys 
 TTT 
 1 Glu 
 CTC 
 6 His 
 GTG 
 1 Gln 
 CTG 
 6 Gln 
 TTG 
 40 Ile 
 TAT 
 4
 Tyr 
 GTA 
 9 Supres 
 CTA 
 2 Supres 
 TTA 
 1 Trp 
 CCA 
 2 SelCys 
 TCA 
 2  

Four Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Ala AGC 
 11 GGC 
 1 CGC 
 4 TGC 
 5 21
 Gly ACC 
 1 GCC 
 9 CCC 
 4 TCC 
 27 41
 Pro AGG 
 7 GGG 
 1 CGG 
 6 TGG 
 42 56
 Thr AGT 
 3 GGT 
   CGT 
 4 TGT 
 8 15
 Val AAC 
 5 GAC 
   CAC 
 1 TAC 
 3 9  Six Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Ser AGA 
 5 GGA 
 1 CGA 
 4 TGA 
 11 ACT 
 1 GCT 
 6   
     
   28
 Arg ACG 
 6 GCG 
 6 CCG 
 17 TCG 
 741   
     
   CCT 
 36 TCT 
 37 843
 Leu AAG 
 4 GAG 
   CAG 
 4 TAG 
 17   
     
   CAA 
 5 TAA 
 19 49
 Two Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Phe AAA 
 2 GAA 
 8   
     
   10
 Asn ATT 
 5 GTT 
 21   
     
   26
 Lys   
     
   CTT 
 569 TTT 
 32 601
 Asp ATC 
 1 GTC 
 7   
     
   8
 Glu   
     
   CTC 
 34 TTC 
 10 44
 His ATG 
   GTG 
 13   
     
   13
 Gln   
     
   CTG 
 37 TTG 
 463 500  Two Box & Other tRNA Sets Isotype tRNA Count by Anticodon Total
 Ile AAT 
 8 GAT 
     
   TAT 
 6 14
 Met   
     
   CAT 
 13   
   13
 Tyr ATA 
 1 GTA 
 9   
     
   10
 Supres   
     
   CTA 
 7 TTA 
 23 30
 Cys ACA 
 1 GCA 
 28   
     
   29
 Trp   
     
   CCA 
 14   
   14
 SelCys   
     
     
   TCA 
 17 17

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.