Genomic tRNA Database: Takifugu rubripes (fr2 Oct 2004)

tRNAscan-SE Analysis of Takifugu rubripes (fr2 Oct 2004)

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>> Genome DB

>> Genome Seq

tRNA Gene Summary



tRNAs Decoding Standard 20 AA 588
 Selenocysteine tRNAs (TCA) 1
 Possible suppressor tRNAs (CTA,TTA) 0
 tRNAs with undetermined 
 or unknown isotypes 10
 Predicted pseudogenes 123
 Total tRNAs 722
 
 
Intron Summary tRNAs with introns 
 43 Val 
 CAC 
 1 Arg 
 GCG 
 1 Arg 
 TCT 
 12 Leu 
 CAA 
 9 His 
 ATG 
 1 Ile 
 TAT 
 5 Tyr 
 GTA 
 14

Four Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Ala AGC 
 13 GGC 
   CGC 
 6 TGC 
 8 27
 Gly ACC 
   GCC 
 18 CCC 
 4 TCC 
 12 34
 Pro AGG 
 10 GGG 
   CGG 
 6 TGG 
 7 23
 Thr AGT 
 18 GGT 
   CGT 
 6 TGT 
 8 32
 Val AAC 
 15 GAC 
   CAC 
 24 TAC 
 9 48  Six Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Ser AGA 
 11 GGA 
   CGA 
 3 TGA 
 8 ACT 
   GCT 
 16   
     
   38
 Arg ACG 
 16 GCG 
 1 CCG 
 3 TCG 
 7   
     
   CCT 
 10 TCT 
 13 50
 Leu AAG 
 11 GAG 
   CAG 
 21 TAG 
 4   
     
   CAA 
 9 TAA 
 7 52
 Two Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Phe AAA 
   GAA 
 20   
     
   20
 Asn ATT 
   GTT 
 24   
     
   24
 Lys   
     
   CTT 
 18 TTT 
 20 38
 Asp ATC 
 1 GTC 
 24   
     
   25
 Glu   
     
   CTC 
 20 TTC 
 15 35
 His ATG 
 2 GTG 
 20   
     
   22
 Gln   
     
   CTG 
 13 TTG 
 9 22  Two Box & Other tRNA Sets Isotype tRNA Count by Anticodon Total
 Ile AAT 
 12 GAT 
     
   TAT 
 6 18
 Met   
     
   CAT 
 35   
   35
 Tyr ATA 
 1 GTA 
 14   
     
   15
 Supres   
     
   CTA 
   TTA 
   0
 Cys ACA 
   GCA 
 12   
     
   12
 Trp   
     
   CCA 
 18   
   18
 SelCys   
     
     
   TCA 
 1 1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.