GtRNAdb

Introduction

This genomic tRNA database contains tRNA gene predictions made by the program tRNAscan-SE (Lowe & Eddy, Nucl Acids Res 25: 955-964, 1997) on complete or nearly complete genomes. Unless otherwise noted, all annotation is automated, and has not been inspected for agreement with published literature.

Inevitably with automated sequence analysis, we find exceptions to general identification rules, isoacceptor type predictions (esp. due to variable post-transcriptional anticodon modification), and questionable tRNA identifications (due to pseudogenes, SINES, or other tRNA-derived elements). We attempt to document all cases we come across, and welcome feedback (lowe @soe.ucsc.edu) on new or unrecognized discrepancies. For a more detailed description of information in tables and the tRNA search algorithm, see the [Legend].

Genomes



Eukarya
Echinozoa (1 genome) [Top]
Strongylocentrotus purpuratus (Sea urchin) (Version 2.1) (1065 tRNAs)    
Embryophyta (3 genomes) [Top]
Brachypodium distachyon (JGI v1.0 8X) (639 tRNAs) Sorghum bicolor (Version 1.0) (577 tRNAs) Zea mays (Version 4a.53) (1163 tRNAs)
Fungi (9 genomes) [Top]
Aspergillus fumigatus (178 tRNAs) Candida glabrata CBS138 (221 tRNAs) Cryptococcus neoformans var JEC21 (141 tRNAs)
Debaryomyces hansenii CBS767 (220 tRNAs) Encephalitozoon cuniculi (46 tRNAs) Eremothecium gossypii (202 tRNAs)
Kluyveromyces lactis NRRL Y-1140 (175 tRNAs) Saccharomyces cerevisiae (286 tRNAs) Schizosaccharomyces pombe (186 tRNAs)
Haemosporida (1 genome) [Top]
Plasmodium falciparum (Oct 2007) (35 tRNAs)    
Insecta (2 genomes) [Top]
Anopheles gambiae (414 tRNAs) Drosophila melanogaster (Release 5 Apr 2006) (298 tRNAs)  
Leishmania (1 genome) [Top]
Leishmania major (Version 5.0) (82 tRNAs)    
Tracheophyta (5 genomes) [Top]
Arabidopsis thaliana (Feb 2004) (630 tRNAs) Glycine max (soybean) (Dec 2008 Glyma 1.0) (860 tRNAs) Medicago truncatula (March 2009 Version 3.0) (581 tRNAs)
Oryza sativa (738 tRNAs) Populus trichocarpa (Jan 2010 Version 2.0) (617 tRNAs)  

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Archaea
Crenarchaeota (20 genomes) [Top]
Aeropyrum pernix K1 (46 tRNAs) Desulfurococcus kamchatkensis 1221n (47 tRNAs) Hyperthermus butylicus DSM 5456 (46 tRNAs)
Ignicoccus hospitalis KIN4 I (47 tRNAs) Metallosphaera sedula DSM 5348 (46 tRNAs) Pyrobaculum aerophilum IM2 (46 tRNAs)
Pyrobaculum arsenaticum DSM 13514 (46 tRNAs) Pyrobaculum calidifontis JCM 11548 (46 tRNAs) Pyrobaculum islandicum DSM 4184 (46 tRNAs)
Sulfolobus acidocaldarius DSM 639 (46 tRNAs) Sulfolobus islandicus L D 8 5 (46 tRNAs) Sulfolobus islandicus L S 2 15 (46 tRNAs)
Sulfolobus islandicus M 14 25 (46 tRNAs) Sulfolobus islandicus M 16 27 (46 tRNAs) Sulfolobus islandicus M 16 4 (46 tRNAs)
Sulfolobus islandicus Y G 57 14 (47 tRNAs) Sulfolobus islandicus Y N 15 51 (46 tRNAs) Sulfolobus solfataricus P2 (46 tRNAs)
Sulfolobus tokodaii 7 (46 tRNAs) Thermosphaera aggregans DSM 11486 (46 tRNAs)  
Euryarchaeota (39 genomes) [Top]
Aciduliprofundum boonei T469 (46 tRNAs) Archaeoglobus fulgidus DSM 4304 (46 tRNAs) Archaeoglobus profundus DSM 5631 (47 tRNAs)
Candidatus Methanoregula boonei 6A8 (49 tRNAs) Ferroglobus placidus DSM 10642 (50 tRNAs) Haloarcula marismortui ATCC 43049 (50 tRNAs)
Halobacterium NRC 1 (47 tRNAs) Halobacterium salinarum R1 (47 tRNAs) Haloferax volcanii DS2 (51 tRNAs)
Halomicrobium mukohataei DSM 12286 (47 tRNAs) Haloquadratum walsbyi DSM 16790 (45 tRNAs) Halorhabdus utahensis DSM 12940 (45 tRNAs)
Halorubrum lacusprofundi ATCC 49239 (51 tRNAs) Haloterrigena turkmenica DSM 5511 (51 tRNAs) Methanobrevibacter ruminantium M1 (57 tRNAs)
Methanobrevibacter smithii ATCC 35061 (36 tRNAs) Methanocaldococcus FS406 22 (36 tRNAs) Methanocaldococcus fervens AG86 (36 tRNAs)
Methanocaldococcus vulcanius M7 (36 tRNAs) Methanocella paludicola SANAE (47 tRNAs) Methanococcoides burtonii DSM 6242 (50 tRNAs)
Methanococcus maripaludis C5 (37 tRNAs) Methanococcus maripaludis C6 (37 tRNAs) Methanococcus maripaludis C7 (37 tRNAs)
Methanococcus maripaludis S2 (37 tRNAs) Methanococcus vannielii SB (37 tRNAs) Methanocorpusculum labreanum Z (53 tRNAs)
Methanoculleus marisnigri JR1 (49 tRNAs) Methanopyrus kandleri AV19 (34 tRNAs) Methanosaeta thermophila PT (47 tRNAs)
Methanosarcina barkeri Fusaro (61 tRNAs) Methanosphaerula palustris E1 9c (56 tRNAs) Natrialba magadii ATCC 43099 (49 tRNAs)
Picrophilus torridus DSM 9790 (47 tRNAs) Thermococcus gammatolerans EJ3 (46 tRNAs) Thermococcus kodakaraensis KOD1 (46 tRNAs)
Thermococcus onnurineus NA1 (46 tRNAs) Thermococcus sibiricus MM 739 (46 tRNAs) uncultured methanogenic archaeon RC-I (53 tRNAs)
Korarchaeota (1 genome) [Top]
Candidatus Korarchaeum cryptofilum OPF8 (46 tRNAs)    
Nanoarchaeota (1 genome) [Top]
Nanoarchaeum equitans Kin4 M (44 tRNAs)    
Thaumarchaeota (2 genomes) [Top]
Cenarchaeum symbiosum A (46 tRNAs) Nitrosopumilus maritimus SCM1 (44 tRNAs)  

[Top]

Bacteria
Acidobacteria (1 genome) [Top]
Acidobacteria bacterium Ellin345 (46 tRNAs)    
Actinobacteria (35 genomes) [Top]
Acidothermus cellulolyticus 11B (45 tRNAs) Arthrobacter FB24 (51 tRNAs) Arthrobacter aurescens TC1 (54 tRNAs)
Bifidobacterium adolescentis ATCC 15703 (54 tRNAs) Clavibacter michiganensis NCPPB 382 (45 tRNAs) Clavibacter michiganensis sepedonicus (45 tRNAs)
Corynebacterium glutamicum ATCC 13032 Bielefeld (60 tRNAs) Corynebacterium glutamicum ATCC 13032 Kitasato (60 tRNAs) Corynebacterium glutamicum R (57 tRNAs)
Corynebacterium jeikeium K411 (50 tRNAs) Corynebacterium urealyticum DSM 7109 (51 tRNAs) Frankia CcI3 (45 tRNAs)
Frankia EAN1pec (46 tRNAs) Frankia alni ACN14a (44 tRNAs) Kineococcus radiotolerans SRS30216 (48 tRNAs)
Mycobacterium JLS (47 tRNAs) Mycobacterium KMS (47 tRNAs) Mycobacterium avium 104 (45 tRNAs)
Mycobacterium bovis BCG Pasteur 1173P2 (47 tRNAs) Mycobacterium marinum M (45 tRNAs) Mycobacterium smegmatis MC2 155 (46 tRNAs)
Mycobacterium tuberculosis F11 (45 tRNAs) Mycobacterium tuberculosis H37Ra (45 tRNAs) Mycobacterium tuberculosis H37Rv (45 tRNAs)
Mycobacterium ulcerans Agy99 (45 tRNAs) Nocardioides JS614 (46 tRNAs) Propionibacterium acnes KPA171202 (45 tRNAs)
Renibacterium salmoninarum ATCC 33209 (45 tRNAs) Rhodococcus RHA1 (52 tRNAs) Rubrobacter xylanophilus DSM 9941 (45 tRNAs)
Saccharopolyspora erythraea NRRL 2338 (49 tRNAs) Streptomyces coelicolor (63 tRNAs) Streptomyces griseus NBRC 13350 (65 tRNAs)
Thermobifida fusca YX (52 tRNAs) Tropheryma whipplei TW08 27 (51 tRNAs)  
Alphaproteobacteria (56 genomes) [Top]
Agrobacterium tumefaciens C58 UWash (53 tRNAs) Anaplasma phagocytophilum HZ (37 tRNAs) Azorhizobium caulinodans ORS 571 (52 tRNAs)
Bartonella bacilliformis KC583 (44 tRNAs) Bartonella quintana Toulouse (42 tRNAs) Bartonella tribocorum CIP 105476 (42 tRNAs)
Beijerinckia indica ATCC 9039 (51 tRNAs) Bradyrhizobium BTAi1 (49 tRNAs) Bradyrhizobium ORS278 (49 tRNAs)
Brucella canis ATCC 23365 (55 tRNAs) Brucella melitensis (54 tRNAs) Brucella suis 1330 (55 tRNAs)
Brucella suis ATCC 23445 (54 tRNAs) Candidatus Pelagibacter ubique HTCC1062 (32 tRNAs) Caulobacter K31 (49 tRNAs)
Dinoroseobacter shibae DFL 12 (43 tRNAs) Ehrlichia canis Jake (36 tRNAs) Ehrlichia chaffeensis Arkansas (37 tRNAs)
Ehrlichia ruminantium Gardel (36 tRNAs) Ehrlichia ruminantium Welgevonden UPSA (36 tRNAs) Ehrlichia ruminantium str. Welgevonden CIRAD (36 tRNAs)
Erythrobacter litoralis HTCC2594 (43 tRNAs) Gluconobacter oxydans 621H (55 tRNAs) Granulibacter bethesdensis CGDNIH1 (52 tRNAs)
Hyphomonas neptunium ATCC 15444 (42 tRNAs) Jannaschia CCS1 (41 tRNAs) Maricaulis maris MCS10 (45 tRNAs)
Methylobacterium 4 46 (62 tRNAs) Methylobacterium extorquens PA1 (58 tRNAs) Methylobacterium radiotolerans JCM 2831 (58 tRNAs)
Neorickettsia sennetsu Miyayama (33 tRNAs) Novosphingobium aromaticivorans DSM 12444 (55 tRNAs) Ochrobactrum anthropi ATCC 49188 (57 tRNAs)
Orientia tsutsugamushi Boryong (34 tRNAs) Paracoccus denitrificans PD1222 (52 tRNAs) Rhizobium etli CFN 42 (50 tRNAs)
Rhizobium leguminosarum bv viciae 3841 (52 tRNAs) Rhodobacter sphaeroides 2 4 1 (52 tRNAs) Rhodobacter sphaeroides ATCC 17025 (54 tRNAs)
Rhodobacter sphaeroides ATCC 17029 (55 tRNAs) Rhodopseudomonas palustris BisA53 (48 tRNAs) Rhodopseudomonas palustris CGA009 (48 tRNAs)
Rhodospirillum rubrum ATCC 11170 (55 tRNAs) Rickettsia akari Hartford (33 tRNAs) Rickettsia canadensis McKiel (33 tRNAs)
Rickettsia massiliae MTU5 (33 tRNAs) Rickettsia rickettsii Sheila Smith (34 tRNAs) Rickettsia rickettsii Iowa (34 tRNAs)
Roseobacter denitrificans OCh 114 (37 tRNAs) Silicibacter pomeroyi DSS-3 (52 tRNAs) Sinorhizobium medicae WSM419 (53 tRNAs)
Sphingomonas wittichii RW1 (48 tRNAs) Sphingopyxis alaskensis RB2256 (45 tRNAs) Wolbachia endosymbiont of Drosophila melanogaster (34 tRNAs)
Xanthobacter autotrophicus Py2 (50 tRNAs) Zymomonas mobilis ZM4 (51 tRNAs)  
Aquificae (3 genomes) [Top]
Hydrogenivirga sp 128-5-R1-1 (56 tRNAs) Hydrogenobaculum Y04AAS1 (45 tRNAs) Sulfurihydrogenibium YO3AOP1 (40 tRNAs)
Bacteroidetes (10 genomes) [Top]
Bacteroides fragilis YCH46 (72 tRNAs) Bacteroides vulgatus ATCC 8482 (81 tRNAs) Candidatus Sulcia muelleri GWSS (31 tRNAs)
Cytophaga hutchinsonii ATCC 33406 (38 tRNAs) Flavobacterium johnsoniae UW101 (60 tRNAs) Flavobacterium psychrophilum JIP02 86 (49 tRNAs)
Gramella forsetii KT0803 (44 tRNAs) Parabacteroides distasonis ATCC 8503 (82 tRNAs) Porphyromonas gingivalis W83 (53 tRNAs)
Salinibacter ruber DSM 13855 (44 tRNAs)    
Betaproteobacteria (41 genomes) [Top]
Acidovorax JS42 (51 tRNAs) Azoarcus BH72 (55 tRNAs) Azoarcus sp EbN1 (58 tRNAs)
Bordetella avium 197N (60 tRNAs) Bordetella petrii (51 tRNAs) Burkholderia 383 (67 tRNAs)
Burkholderia ambifaria MC40 6 (67 tRNAs) Burkholderia cenocepacia AU 1054 (66 tRNAs) Burkholderia cenocepacia HI2424 (66 tRNAs)
Burkholderia cenocepacia MC0 3 (66 tRNAs) Burkholderia cepacia AMMD (68 tRNAs) Burkholderia mallei ATCC 23344 (55 tRNAs)
Burkholderia mallei NCTC 10229 (56 tRNAs) Burkholderia mallei NCTC 10247 (55 tRNAs) Burkholderia mallei SAVP1 (55 tRNAs)
Burkholderia pseudomallei 1106a (59 tRNAs) Burkholderia pseudomallei 1710b (59 tRNAs) Burkholderia pseudomallei 668 (59 tRNAs)
Burkholderia pseudomallei K96243 (60 tRNAs) Burkholderia thailandensis E264 (58 tRNAs) Burkholderia vietnamiensis G4 (67 tRNAs)
Burkholderia xenovorans LB400 (63 tRNAs) Dechloromonas aromatica RCB (63 tRNAs) Herminiimonas arsenicoxydans (45 tRNAs)
Janthinobacterium Marseille (46 tRNAs) Leptothrix cholodnii SP 6 (50 tRNAs) Methylibium petroleiphilum PM1 (68 tRNAs)
Methylobacillus flagellatus KT (46 tRNAs) Neisseria gonorrhoeae FA 1090 (54 tRNAs) Neisseria meningitidis 053442 (59 tRNAs)
Neisseria meningitidis FAM18 (59 tRNAs) Neisseria meningitidis MC58 (59 tRNAs) Neisseria meningitidis Z2491 (58 tRNAs)
Nitrosospira multiformis ATCC 25196 (43 tRNAs) Polaromonas JS666 (44 tRNAs) Polaromonas naphthalenivorans CJ2 (51 tRNAs)
Polynucleobacter QLW-P1DMWA-1 (38 tRNAs) Polynucleobacter necessarius STIR1 (37 tRNAs) Ralstonia eutropha JMP134 (65 tRNAs)
Rhodoferax ferrireducens DSM 15236 (45 tRNAs) Thiobacillus denitrificans ATCC 25259 (43 tRNAs)  
Chlamydiae (7 genomes) [Top]
Chlamydia trachomatis (37 tRNAs) Chlamydia trachomatis 434 Bu (37 tRNAs) Chlamydia trachomatis L2b UCH 1 proctitis (37 tRNAs)
Chlamydophila abortus S26 3 (38 tRNAs) Chlamydophila pneumoniae CWL029 (38 tRNAs) Chlamydophila pneumoniae J138 (38 tRNAs)
Chlamydophila pneumoniae TW 183 (38 tRNAs)    
Chlorobi (4 genomes) [Top]
Chlorobium chlorochromatii CaD3 (45 tRNAs) Chlorobium phaeobacteroides DSM 266 (47 tRNAs) Chlorobium tepidum TLS (50 tRNAs)
Pelodictyon luteolum DSM 273 (48 tRNAs)    
Chloroflexi (5 genomes) [Top]
Chloroflexus aurantiacus J 10 fl (47 tRNAs) Dehalococcoides BAV1 (46 tRNAs) Dehalococcoides CBDB1 (46 tRNAs)
Dehalococcoides ethenogenes 195 (46 tRNAs) Roseiflexus castenholzii DSM 13941 (48 tRNAs)  
Cyanobacteria (22 genomes) [Top]
Acaryochloris marina MBIC11017 (67 tRNAs) Anabaena variabilis ATCC 29413 (47 tRNAs) Crocosphaera watsonii WH8501 (37 tRNAs)
Cyanothece ATCC 51142 (41 tRNAs) Microcystis aeruginosa NIES 843 (42 tRNAs) Prochlorococcus marinus AS9601 (38 tRNAs)
Prochlorococcus marinus CCMP1375 (39 tRNAs) Prochlorococcus marinus MIT 9211 (40 tRNAs) Prochlorococcus marinus MIT 9215 (38 tRNAs)
Prochlorococcus marinus MIT 9301 (37 tRNAs) Prochlorococcus marinus MIT 9303 (43 tRNAs) Prochlorococcus marinus MIT 9515 (37 tRNAs)
Prochlorococcus marinus NATL1A (38 tRNAs) Synechococcus CC9311 (43 tRNAs) Synechococcus CC9605 (43 tRNAs)
Synechococcus CC9902 (44 tRNAs) Synechococcus PCC 7002 (42 tRNAs) Synechococcus RCC307 (41 tRNAs)
Synechococcus WH 7803 (43 tRNAs) Synechococcus elongatus PCC 6301 (44 tRNAs) Synechococcus elongatus PCC 7942 (44 tRNAs)
Trichodesmium erythraeum IMS101 (38 tRNAs)    
Deinococcus-Thermus (3 genomes) [Top]
Deinococcus geothermalis DSM 11300 (48 tRNAs) Thermus thermophilus HB27 (47 tRNAs) Thermus thermophilus HB8 (47 tRNAs)
Deltaproteobacteria (9 genomes) [Top]
Desulfotalea psychrophila LSv54 (63 tRNAs) Desulfovibrio vulgaris DP4 (66 tRNAs) Desulfovibrio vulgaris Hildenborough (66 tRNAs)
Geobacter lovleyi SZ (44 tRNAs) Geobacter uraniireducens Rf4 (48 tRNAs) Myxococcus xanthus DK 1622 (62 tRNAs)
Pelobacter propionicus DSM 2379 (53 tRNAs) Syntrophobacter fumaroxidans MPOB (49 tRNAs) Syntrophus aciditrophicus SB (48 tRNAs)
Epsilonproteobacteria (11 genomes) [Top]
Arcobacter butzleri RM4018 (53 tRNAs) Campylobacter concisus 13826 (46 tRNAs) Campylobacter curvus 525 92 (46 tRNAs)
Campylobacter jejuni 81116 (43 tRNAs) Campylobacter jejuni RM1221 (43 tRNAs) Campylobacter jejuni doylei 269 97 (43 tRNAs)
Helicobacter acinonychis Sheeba (36 tRNAs) Helicobacter pylori 26695 (36 tRNAs) Helicobacter pylori G27 (36 tRNAs)
Helicobacter pylori HPAG1 (36 tRNAs) Helicobacter pylori J99 (36 tRNAs)  
Firmicutes (86 genomes) [Top]
Alkaliphilus metalliredigens QYMF (103 tRNAs) Alkaliphilus oremlandii OhILAs (85 tRNAs) Bacillus amyloliquefaciens FZB42 (89 tRNAs)
Bacillus anthracis A2012 (32 tRNAs) Bacillus anthracis Ames (95 tRNAs) Bacillus cereus ATCC 10987 (97 tRNAs)
Bacillus licheniformis ATCC 14580 (71 tRNAs) Bacillus licheniformis DSM 13 (72 tRNAs) Bacillus thuringiensis Al Hakam (104 tRNAs)
Bacillus weihenstephanensis KBAB4 (108 tRNAs) Caldicellulosiruptor saccharolyticus DSM 8903 (46 tRNAs) Candidatus Desulforudis audaxviator MP104C (44 tRNAs)
Clostridium beijerinckii NCIMB 8052 (94 tRNAs) Clostridium botulinum A ATCC 19397 (80 tRNAs) Clostridium botulinum A Hall (80 tRNAs)
Clostridium botulinum A3 Loch Maree (80 tRNAs) Clostridium botulinum B Eklund 17B (77 tRNAs) Clostridium botulinum B1 Okra (81 tRNAs)
Clostridium botulinum F Langeland (80 tRNAs) Clostridium difficile 630 (87 tRNAs) Clostridium kluyveri DSM 555 (60 tRNAs)
Clostridium novyi NT (81 tRNAs) Clostridium perfringens ATCC 13124 (92 tRNAs) Clostridium phytofermentans ISDg (59 tRNAs)
Clostridium tetani E88 (54 tRNAs) Clostridium thermocellum ATCC 27405 (56 tRNAs) Desulfitobacterium hafniense Y51 (57 tRNAs)
Enterococcus faecalis V583 (67 tRNAs) Exiguobacterium sibiricum 255 15 (69 tRNAs) Finegoldia magna ATCC 29328 (47 tRNAs)
Geobacillus kaustophilus HTA426 (87 tRNAs) Heliobacterium modesticaldum Ice1 (108 tRNAs) Lactobacillus acidophilus NCFM (61 tRNAs)
Lactobacillus brevis ATCC 367 (63 tRNAs) Lactobacillus casei ATCC 334 (59 tRNAs) Lactobacillus fermentum IFO 3956 (57 tRNAs)
Lactobacillus gasseri ATCC 33323 (75 tRNAs) Lactobacillus helveticus DPC 4571 (61 tRNAs) Lactobacillus johnsonii NCC 533 (78 tRNAs)
Lactobacillus sakei 23K (63 tRNAs) Lactobacillus salivarius UCC118 (76 tRNAs) Lactococcus lactis cremoris MG1363 (62 tRNAs)
Lactococcus lactis cremoris SK11 (61 tRNAs) Leuconostoc citreum KM20 (69 tRNAs) Leuconostoc mesenteroides ATCC 8293 (70 tRNAs)
Listeria monocytogenes (67 tRNAs) Listeria welshimeri serovar 6b SLCC5334 (66 tRNAs) Lysinibacillus sphaericus C3 41 (85 tRNAs)
Moorella thermoacetica ATCC 39073 (50 tRNAs) Pediococcus pentosaceus ATCC 25745 (55 tRNAs) Pelotomaculum thermopropionicum SI (50 tRNAs)
Staphylococcus aureus JH1 (59 tRNAs) Staphylococcus aureus JH9 (58 tRNAs) Staphylococcus aureus Mu3 (59 tRNAs)
Staphylococcus aureus Mu50 (58 tRNAs) Staphylococcus aureus Newman (59 tRNAs) Staphylococcus aureus USA300 TCH1516 (59 tRNAs)
Staphylococcus epidermidis ATCC 12228 (58 tRNAs) Staphylococcus epidermidis RP62A (59 tRNAs) Streptococcus agalactiae A909 (80 tRNAs)
Streptococcus agalactiae NEM316 (80 tRNAs) Streptococcus gordonii Challis substr CH1 (59 tRNAs) Streptococcus pneumoniae CGSP14 (57 tRNAs)
Streptococcus pneumoniae D39 (58 tRNAs) Streptococcus pneumoniae Hungary19A 6 (58 tRNAs) Streptococcus pneumoniae R6 (58 tRNAs)
Streptococcus pneumoniae TIGR4 (58 tRNAs) Streptococcus pyogenes M1 GAS (60 tRNAs) Streptococcus pyogenes MGAS10270 (67 tRNAs)
Streptococcus pyogenes MGAS10394 (67 tRNAs) Streptococcus pyogenes MGAS10750 (67 tRNAs) Streptococcus pyogenes MGAS2096 (67 tRNAs)
Streptococcus pyogenes MGAS315 (67 tRNAs) Streptococcus pyogenes MGAS5005 (67 tRNAs) Streptococcus pyogenes MGAS6180 (67 tRNAs)
Streptococcus pyogenes MGAS8232 (67 tRNAs) Streptococcus pyogenes MGAS9429 (67 tRNAs) Streptococcus pyogenes Manfredo (66 tRNAs)
Streptococcus sanguinis SK36 (61 tRNAs) Streptococcus suis 05ZYH33 (56 tRNAs) Streptococcus suis 98HAH33 (56 tRNAs)
Streptococcus thermophilus CNRZ1066 (67 tRNAs) Streptococcus thermophilus LMG 18311 (67 tRNAs) Syntrophomonas wolfei Goettingen (46 tRNAs)
Thermoanaerobacter X514 (54 tRNAs) Thermoanaerobacter pseudethanolicus ATCC 33223 (56 tRNAs)  
Gammaproteobacteria (92 genomes) [Top]
Acinetobacter baumannii (72 tRNAs) Acinetobacter baumannii ATCC 17978 (70 tRNAs) Acinetobacter baumannii AYE (72 tRNAs)
Actinobacillus pleuropneumoniae serovar 3 JL03 (62 tRNAs) Actinobacillus succinogenes 130Z (59 tRNAs) Aeromonas hydrophila ATCC 7966 (125 tRNAs)
Aeromonas salmonicida A449 (108 tRNAs) Alcanivorax borkumensis SK2 (42 tRNAs) Blochmannia floridanus (37 tRNAs)
Buchnera aphidicola Cc Cinara cedri (30 tRNAs) Candidatus Blochmannia floridanus (37 tRNAs) Candidatus Blochmannia pennsylvanicus BPEN (39 tRNAs)
Candidatus Carsonella ruddii (24 tRNAs) Candidatus Ruthia magnifica Cm Calyptogena magnifica (36 tRNAs) Candidatus Vesicomyosocius okutanii HA (35 tRNAs)
Chromohalobacter salexigens DSM 3043 (69 tRNAs) Colwellia psychrerythraea 34H (88 tRNAs) Coxiella burnetii RSA 331 (42 tRNAs)
Dichelobacter nodosus VCS1703A (45 tRNAs) Enterobacter 638 (82 tRNAs) Escherichia coli 536 (79 tRNAs)
Escherichia coli APEC O1 (94 tRNAs) Escherichia coli CFT073 (87 tRNAs) Escherichia coli DH10B (86 tRNAs)
Escherichia coli E24377A (87 tRNAs) Escherichia coli HS (86 tRNAs) Escherichia coli K12 (86 tRNAs)
Escherichia coli SECEC SMS 3 5 (88 tRNAs) Escherichia coli UTI89 (87 tRNAs) Francisella philomiragia ATCC 25017 (39 tRNAs)
Francisella tularensis holarctica (38 tRNAs) Francisella tularensis holarctica FTA (38 tRNAs) Francisella tularensis holarctica OSU18 (38 tRNAs)
Francisella tularensis mediasiatica FSC147 (38 tRNAs) Haemophilus ducreyi 35000HP (47 tRNAs) Haemophilus influenzae 86 028NP (57 tRNAs)
Haemophilus influenzae PittEE (57 tRNAs) Haemophilus influenzae PittGG (54 tRNAs) Haemophilus somnus 129PT (49 tRNAs)
Haemophilus somnus 2336 (48 tRNAs) Hahella chejuensis KCTC 2396 (67 tRNAs) Halorhodospira halophila SL1 (46 tRNAs)
Idiomarina loihiensis L2TR (56 tRNAs) Klebsiella pneumoniae MGH 78578 (85 tRNAs) Legionella pneumophila Corby (44 tRNAs)
Legionella pneumophila Lens (43 tRNAs) Legionella pneumophila Paris (43 tRNAs) Legionella pneumophila Philadelphia 1 (43 tRNAs)
Mannheimia succiniciproducens MBEL55E (59 tRNAs) Marinobacter aquaeolei VT8 (51 tRNAs) Marinomonas MWYL1 (83 tRNAs)
Methylococcus capsulatus Bath (46 tRNAs) Nitrosococcus oceani ATCC 19707 (45 tRNAs) Photobacterium profundum SS9 (167 tRNAs)
Pseudoalteromonas haloplanktis TAC125 (106 tRNAs) Pseudomonas aeruginosa PA7 (63 tRNAs) Pseudomonas fluorescens PfO-1 (72 tRNAs)
Pseudomonas mendocina ymp (65 tRNAs) Pseudomonas putida F1 (75 tRNAs) Pseudomonas putida GB 1 (74 tRNAs)
Pseudomonas putida W619 (74 tRNAs) Pseudomonas stutzeri A1501 (59 tRNAs) Psychromonas ingrahamii 37 (85 tRNAs)
Salmonella enterica arizonae serovar 62 z4 z23 (83 tRNAs) Salmonella enterica serovar Paratyphi B SPB7 (84 tRNAs) Salmonella typhi Ty2 (77 tRNAs)
Serratia proteamaculans 568 (83 tRNAs) Shewanella amazonensis SB2B (101 tRNAs) Shewanella baltica OS155 (117 tRNAs)
Shewanella baltica OS185 (105 tRNAs) Shewanella baltica OS195 (103 tRNAs) Shewanella denitrificans OS217 (93 tRNAs)
Shewanella frigidimarina NCIMB 400 (96 tRNAs) Shewanella halifaxensis HAW EB4 (124 tRNAs) Shewanella pealeana ATCC 700345 (142 tRNAs)
Shewanella woodyi ATCC 51908 (125 tRNAs) Shigella boydii CDC 3083 94 (97 tRNAs) Sodalis glossinidius morsitans (69 tRNAs)
Vibrio cholerae MO10 (62 tRNAs) Vibrio cholerae O395 (96 tRNAs) Vibrio fischeri ES114 (119 tRNAs)
Vibrio vulnificus CMCP6 (111 tRNAs) Vibrio vulnificus YJ016 (112 tRNAs) Xanthomonas campestris (53 tRNAs)
Xylella fastidiosa M12 (50 tRNAs) Xylella fastidiosa M23 (50 tRNAs) Yersinia enterocolitica 8081 (79 tRNAs)
Yersinia pestis Angola (68 tRNAs) Yersinia pestis CO92 (68 tRNAs) Yersinia pestis Pestoides F (70 tRNAs)
Yersinia pseudotuberculosis IP 31758 (82 tRNAs) Yersinia pseudotuberculosis YPIII (80 tRNAs)  
Spirochaetes (2 genomes) [Top]
Borrelia afzelii PKo (32 tRNAs) Borrelia garinii PBi (32 tRNAs)  
Tenericutes (10 genomes) [Top]
Acholeplasma laidlawii PG 8A (36 tRNAs) Mesoplasma florum L1 (28 tRNAs) Mycoplasma agalactiae PG2 (33 tRNAs)
Mycoplasma capricolum ATCC 27343 (29 tRNAs) Mycoplasma hyopneumoniae 232 (29 tRNAs) Mycoplasma hyopneumoniae 7448 (29 tRNAs)
Mycoplasma hyopneumoniae J (29 tRNAs) Mycoplasma mobile 163K (27 tRNAs) Mycoplasma synoviae 53 (33 tRNAs)
Ureaplasma parvum serovar 3 ATCC 27815 (29 tRNAs)    
Thermotogae (3 genomes) [Top]
Petrotoga mobilis SJ95 (48 tRNAs) Thermosipho melanesiensis BI429 (50 tRNAs) Thermotoga lettingae TMO (46 tRNAs)
Verrucomicrobia (1 genome) [Top]
Opitutus terrae PB90 1 (59 tRNAs)    
ssDNA viruses (1 genome) [Top]
Chlamydophila pneumoniae AR39 (38 tRNAs)    

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The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.