Genomic tRNA Database: Medicago truncatula (March 2009 Version 3.0)

tRNAscan-SE Analysis of Medicago truncatula (March 2009 Version 3.0)

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>> FASTA Seqs

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>> Genome DB

>> Genome Seq

tRNA Gene Summary



tRNAs Decoding Standard 20 AA 581
 Selenocysteine tRNAs (TCA) 1
 Possible suppressor tRNAs (CTA,TTA) 5
 tRNAs with undetermined 
 or unknown isotypes 7
 Predicted pseudogenes 132
 Total tRNAs 726
 
 
Intron Summary tRNAs with introns 
 40 Ala 
 TGC 
 1 Ser 
 GCT 
 1 Leu 
 TAA 
 2 Asn 
 ATT 
 1 Lys 
 TTT 
 2 Glu 
 TTC 
 3 Gln 
 TTG 
 2 Ile 
 TAT 
 4 Met 
 CAT 
 13 Tyr 
 ATA 
 1 Tyr 
 GTA 
 9 SelCys 
 TCA 
 1

Four Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Ala AGC 
 25 GGC 
   CGC 
 3 TGC 
 16 44
 Gly ACC 
 1 GCC 
 23 CCC 
 3 TCC 
 15 42
 Pro AGG 
 7 GGG 
   CGG 
 1 TGG 
 11 19
 Thr AGT 
 10 GGT 
 4 CGT 
 1 TGT 
 10 25
 Val AAC 
 17 GAC 
 3 CAC 
 7 TAC 
 7 34  Six Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Ser AGA 
 12 GGA 
 2 CGA 
 2 TGA 
 8 ACT 
   GCT 
 15   
     
   39
 Arg ACG 
 12 GCG 
   CCG 
 3 TCG 
 5   
     
   CCT 
 6 TCT 
 8 34
 Leu AAG 
 9 GAG 
   CAG 
 4 TAG 
 10   
     
   CAA 
 14 TAA 
 7 44
 Two Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Phe AAA 
   GAA 
 26   
     
   26
 Asn ATT 
 9 GTT 
 28   
     
   37
 Lys   
     
   CTT 
 16 TTT 
 18 34
 Asp ATC 
   GTC 
 28   
     
   28
 Glu   
     
   CTC 
 11 TTC 
 19 30
 His ATG 
   GTG 
 17   
     
   17
 Gln   
     
   CTG 
 5 TTG 
 17 22  Two Box & Other tRNA Sets Isotype tRNA Count by Anticodon Total
 Ile AAT 
 19 GAT 
     
   TAT 
 10 29
 Met   
     
   CAT 
 40   
   40
 Tyr ATA 
 1 GTA 
 12   
     
   13
 Supres   
     
   CTA 
   TTA 
 5 5
 Cys ACA 
   GCA 
 10   
     
   10
 Trp   
     
   CCA 
 14   
   14
 SelCys   
     
     
   TCA 
 1 1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.