Genomic tRNA Database: Oryza sativa

tRNAscan-SE Analysis of Oryza sativa

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>> Genome Seq

tRNA Gene Summary



tRNAs Decoding Standard 20 AA 738
 Selenocysteine tRNAs (TCA) 0
 Possible suppressor tRNAs (CTA,TTA) 0
 tRNAs with undetermined 
 or unknown isotypes 0
 Predicted pseudogenes 26
 Total tRNAs 764
 
 
Intron Summary tRNAs with introns 
 36 Ala 
 GGC 
 1 Thr 
 TGT 
 1 Ser 
 TGA 
 1 Ser 
 GCT 
 2 Met 
 CAT 
 15 Tyr 
 ATA 
 1 Tyr 
 GTA 
 13 Cys 
 GCA 
 2

Four Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Ala AGC 
 20 GGC 
 1 CGC 
 12 TGC 
 10 43
 Gly ACC 
   GCC 
 28 CCC 
 9 TCC 
 10 47
 Pro AGG 
 14 GGG 
   CGG 
 9 TGG 
 14 37
 Thr AGT 
 11 GGT 
 8 CGT 
 5 TGT 
 15 39
 Val AAC 
 17 GAC 
 16 CAC 
 10 TAC 
 4 47  Six Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Ser AGA 
 12 GGA 
 4 CGA 
 8 TGA 
 17 ACT 
   GCT 
 20   
     
   61
 Arg ACG 
 24 GCG 
   CCG 
 8 TCG 
 4   
     
   CCT 
 11 TCT 
 12 59
 Leu AAG 
 15 GAG 
   CAG 
 10 TAG 
 10   
     
   CAA 
 19 TAA 
 4 58
 Two Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Phe AAA 
   GAA 
 20   
     
   20
 Asn ATT 
   GTT 
 29   
     
   29
 Lys   
     
   CTT 
 20 TTT 
 12 32
 Asp ATC 
 1 GTC 
 31   
     
   32
 Glu   
     
   CTC 
 25 TTC 
 16 41
 His ATG 
   GTG 
 26   
     
   26
 Gln   
     
   CTG 
 10 TTG 
 21 31  Two Box & Other tRNA Sets Isotype tRNA Count by Anticodon Total
 Ile AAT 
 18 GAT 
     
   TAT 
 5 23
 Met   
     
   CAT 
 56   
   56
 Tyr ATA 
 2 GTA 
 19   
     
   21
 Supres   
     
   CTA 
   TTA 
   0
 Cys ACA 
 1 GCA 
 17   
     
   18
 Trp   
     
   CCA 
 18   
   18
 SelCys   
     
     
   TCA 
   0

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.