Genomic tRNA Database: Populus trichocarpa (June 2004 Version 1.0)

tRNAscan-SE Analysis of Populus trichocarpa (June 2004 Version 1.0)

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>> Genome DB

>> Genome Seq

tRNA Gene Summary



tRNAs Decoding Standard 20 AA 809
 Selenocysteine tRNAs (TCA) 1
 Possible suppressor tRNAs (CTA,TTA) 1
 tRNAs with undetermined 
 or unknown isotypes 0
 Predicted pseudogenes 47
 Total tRNAs 858
 
 
Intron Summary tRNAs with introns 
 81 Leu 
 AAG 
 40 Leu 
 TAA 
 1 Phe 
 AAA 
 6 Ile 
 AAT 
 1 Ile 
 TAT 
 1 Met 
 CAT 
 14 Tyr 
 GTA 
 18

Four Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Ala AGC 
 22 GGC 
 1 CGC 
 6 TGC 
 19 48
 Gly ACC 
   GCC 
 28 CCC 
 7 TCC 
 21 56
 Pro AGG 
 18 GGG 
   CGG 
 5 TGG 
 30 53
 Thr AGT 
 15 GGT 
 2 CGT 
 6 TGT 
 13 36
 Val AAC 
 18 GAC 
 6 CAC 
 11 TAC 
 9 44  Six Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Ser AGA 
 16 GGA 
 5 CGA 
 7 TGA 
 13 ACT 
   GCT 
 20   
     
   61
 Arg ACG 
 20 GCG 
   CCG 
 6 TCG 
 9   
     
   CCT 
 11 TCT 
 13 59
 Leu AAG 
 42 GAG 
   CAG 
 6 TAG 
 12   
     
   CAA 
 19 TAA 
 10 89
 Two Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Phe AAA 
 3 GAA 
 22   
     
   25
 Asn ATT 
   GTT 
 32   
     
   32
 Lys   
     
   CTT 
 18 TTT 
 19 37
 Asp ATC 
   GTC 
 37   
     
   37
 Glu   
     
   CTC 
 24 TTC 
 18 42
 His ATG 
   GTG 
 19   
     
   19
 Gln   
     
   CTG 
 11 TTG 
 19 30  Two Box & Other tRNA Sets Isotype tRNA Count by Anticodon Total
 Ile AAT 
 23 GAT 
 5   
   TAT 
 10 38
 Met   
     
   CAT 
 44   
   44
 Tyr ATA 
   GTA 
 24   
     
   24
 Supres   
     
   CTA 
   TTA 
 1 1
 Cys ACA 
   GCA 
 16   
     
   16
 Trp   
     
   CCA 
 19   
   19
 SelCys   
     
     
   TCA 
 1 1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.