Genomic tRNA Database: Saccharomyces cerevisiae

tRNAscan-SE Analysis of Saccharomyces cerevisiae

>> Main Overview

>> tRNAs by Isotype

>> tRNAs by Locus

>> Secondary Structures

>> tRNA Alignments

>> FASTA Seqs

>> Run Options/Stats

>> Analysis Notes

>> Modomics tRNA Modifications

>> Genome DB

>> Genome Seq

tRNA Gene Summary



tRNAs Decoding Standard 20 AA 286
 Selenocysteine tRNAs (TCA) 1
 Possible suppressor tRNAs (CTA,TTA) 0
 tRNAs with undetermined 
 or unknown isotypes 2
 Predicted pseudogenes 6
 Total tRNAs 295
 
 
Intron Summary tRNAs with introns 
 59 Pro 
 TGG 
 10 Ser 
 CGA 
 1 Ser 
 GCT 
 2 Leu 
 TAG 
 3 Leu 
 CAA 
 10 Phe 
 GAA 
 10 Lys 
 TTT 
 7 Ile 
 TAT 
 2 Tyr 
 GTA 
 8 Trp 
 CCA 
 6

Four Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Ala AGC 
 11 GGC 
   CGC 
   TGC 
 6 17
 Gly ACC 
   GCC 
 16 CCC 
 2 TCC 
 3 21
 Pro AGG 
 2 GGG 
   CGG 
   TGG 
 10 12
 Thr AGT 
 11 GGT 
   CGT 
 1 TGT 
 5 17
 Val AAC 
 14 GAC 
   CAC 
 2 TAC 
 3 19  Six Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Ser AGA 
 11 GGA 
   CGA 
 1 TGA 
 4 ACT 
   GCT 
 2   
     
   18
 Arg ACG 
 7 GCG 
   CCG 
 1 TCG 
     
     
   CCT 
 1 TCT 
 12 21
 Leu AAG 
   GAG 
 1 CAG 
   TAG 
 3   
     
   CAA 
 10 TAA 
 7 21
 Two Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Phe AAA 
   GAA 
 11   
     
   11
 Asn ATT 
   GTT 
 11   
     
   11
 Lys   
     
   CTT 
 14 TTT 
 8 22
 Asp ATC 
   GTC 
 16   
     
   16
 Glu   
     
   CTC 
 2 TTC 
 15 17
 His ATG 
   GTG 
 8   
     
   8
 Gln   
     
   CTG 
 1 TTG 
 9 10  Two Box & Other tRNA Sets Isotype tRNA Count by Anticodon Total
 Ile AAT 
 13 GAT 
 1   
   TAT 
 2 16
 Met   
     
   CAT 
 11   
   11
 Tyr ATA 
   GTA 
 8   
     
   8
 Supres   
     
   CTA 
   TTA 
   0
 Cys ACA 
   GCA 
 4   
     
   4
 Trp   
     
   CCA 
 6   
   6
 SelCys   
     
     
   TCA 
 1 1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.