Genomic tRNA Database: Sorghum bicolor (Version 1.0)

tRNAscan-SE Analysis of Sorghum bicolor (Version 1.0)

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>> tRNAs by Isotype

>> tRNAs by Locus

>> Secondary Structures

>> tRNA Alignments

>> FASTA Seqs

>> Run Options/Stats

>> Analysis Notes

>> Genome DB

>> Genome Seq

tRNA Gene Summary



tRNAs Decoding Standard 20 AA 577
 Selenocysteine tRNAs (TCA) 1
 Possible suppressor tRNAs (CTA,TTA) 1
 tRNAs with undetermined 
 or unknown isotypes 8
 Predicted pseudogenes 62
 Total tRNAs 649
 
 
Intron Summary tRNAs with introns 
 32 Ser 
 TGA 
 1 Leu 
 CAG 
 1 Met 
 CAT 
 17 Tyr 
 ATA 
 1 Tyr 
 GTA 
 12

Four Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Ala AGC 
 18 GGC 
   CGC 
 11 TGC 
 13 42
 Gly ACC 
   GCC 
 24 CCC 
 6 TCC 
 10 40
 Pro AGG 
 14 GGG 
   CGG 
 7 TGG 
 11 32
 Thr AGT 
 12 GGT 
 2 CGT 
 6 TGT 
 9 29
 Val AAC 
 16 GAC 
 2 CAC 
 10 TAC 
 4 32  Six Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Ser AGA 
 11 GGA 
 3 CGA 
 6 TGA 
 12 ACT 
   GCT 
 13   
     
   45
 Arg ACG 
 15 GCG 
   CCG 
 7 TCG 
 4   
     
   CCT 
 10 TCT 
 7 43
 Leu AAG 
 15 GAG 
   CAG 
 11 TAG 
 9   
     
   CAA 
 9 TAA 
 4 48
 Two Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Phe AAA 
   GAA 
 20   
     
   20
 Asn ATT 
 1 GTT 
 16   
     
   17
 Lys   
     
   CTT 
 18 TTT 
 9 27
 Asp ATC 
 2 GTC 
 24   
     
   26
 Glu   
     
   CTC 
 23 TTC 
 13 36
 His ATG 
 1 GTG 
 15   
     
   16
 Gln   
     
   CTG 
 13 TTG 
 11 24  Two Box & Other tRNA Sets Isotype tRNA Count by Anticodon Total
 Ile AAT 
 17 GAT 
     
   TAT 
 5 22
 Met   
     
   CAT 
 37   
   37
 Tyr ATA 
 1 GTA 
 14   
     
   15
 Supres   
     
   CTA 
 1 TTA 
   1
 Cys ACA 
   GCA 
 13   
     
   13
 Trp   
     
   CCA 
 13   
   13
 SelCys   
     
     
   TCA 
 1 1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.