Genomic tRNA Database: Schizosaccharomyces pombe

tRNAscan-SE Analysis of Schizosaccharomyces pombe

>> Main Overview

>> tRNAs by Isotype

>> tRNAs by Locus

>> Secondary Structures

>> tRNA Alignments

>> FASTA Seqs

>> Run Options/Stats

>> Analysis Notes

>> Genome DB

>> Genome Seq

tRNA Gene Summary



tRNAs Decoding Standard 20 AA 186
 Selenocysteine tRNAs (TCA) 0
 Possible suppressor tRNAs (CTA,TTA) 0
 tRNAs with undetermined 
 or unknown isotypes 0
 Predicted pseudogenes 2
 Total tRNAs 188
 
 
Intron Summary tRNAs with introns 
 44 Ala 
 CGC 
 1 Pro 
 CGG 
 1 Val 
 AAC 
 9 Ser 
 CGA 
 1 Ser 
 TGA 
 2 Ser 
 GCT 
 3 Arg 
 CCG 
 1 Arg 
 CCT 
 1 Leu 
 CAG 
 1 Leu 
 TAG 
 1 Leu 
 CAA 
 4 Leu 
 TAA 
 2 Lys 
 CTT 
 9 Ile 
 TAT 
 1 Met 
 CAT 
 3 Tyr 
 GTA 
 4

Four Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Ala AGC 
 9 GGC 
   CGC 
 1 TGC 
 2 12
 Gly ACC 
   GCC 
 8 CCC 
 1 TCC 
 3 12
 Pro AGG 
 6 GGG 
   CGG 
 1 TGG 
 2 9
 Thr AGT 
 7 GGT 
   CGT 
 1 TGT 
 3 11
 Val AAC 
 9 GAC 
   CAC 
 1 TAC 
 3 13  Six Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Ser AGA 
 7 GGA 
   CGA 
 1 TGA 
 3 ACT 
   GCT 
 3   
     
   14
 Arg ACG 
 8 GCG 
   CCG 
 1 TCG 
 2   
     
   CCT 
 1 TCT 
 3 15
 Leu AAG 
 5 GAG 
   CAG 
 1 TAG 
 2   
     
   CAA 
 4 TAA 
 2 14
 Two Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Phe AAA 
   GAA 
 6   
     
   6
 Asn ATT 
   GTT 
 7   
     
   7
 Lys   
     
   CTT 
 9 TTT 
 4 13
 Asp ATC 
   GTC 
 8   
     
   8
 Glu   
     
   CTC 
 6 TTC 
 5 11
 His ATG 
   GTG 
 5   
     
   5
 Gln   
     
   CTG 
 2 TTG 
 4 6  Two Box & Other tRNA Sets Isotype tRNA Count by Anticodon Total
 Ile AAT 
 8 GAT 
 1   
   TAT 
 1 10
 Met   
     
   CAT 
 10   
   10
 Tyr ATA 
   GTA 
 4   
     
   4
 Supres   
     
   CTA 
   TTA 
   0
 Cys ACA 
   GCA 
 3   
     
   3
 Trp   
     
   CCA 
 3   
   3
 SelCys   
     
     
   TCA 
   0

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.