Genomic tRNA Database: Zea mays (Version 3a.50)

tRNAscan-SE Analysis of Zea mays (Version 3a.50)

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>> Genome Seq

tRNA Gene Summary



tRNAs Decoding Standard 20 AA 1554
 Selenocysteine tRNAs (TCA) 0
 Possible suppressor tRNAs (CTA,TTA) 6
 tRNAs with undetermined 
 or unknown isotypes 1
 Predicted pseudogenes 0
 Total tRNAs 1561
 
 
Intron Summary tRNAs with introns 
 46 Val 
 CAC 
 1 Met 
 CAT 
 28 Tyr 
 GTA 
 17

Four Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Ala AGC 
 101 GGC 
   CGC 
 31 TGC 
 18 150
 Gly ACC 
   GCC 
 42 CCC 
 15 TCC 
 14 71
 Pro AGG 
 21 GGG 
   CGG 
 10 TGG 
 39 70
 Thr AGT 
 30 GGT 
 14 CGT 
 7 TGT 
 19 70
 Val AAC 
 32 GAC 
 12 CAC 
 19 TAC 
 4 67  Six Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Ser AGA 
 16 GGA 
 27 CGA 
 8 TGA 
 12 ACT 
   GCT 
 21   
     
   84
 Arg ACG 
 39 GCG 
   CCG 
 10 TCG 
 9   
     
   CCT 
 12 TCT 
 11 81
 Leu AAG 
 41 GAG 
   CAG 
 16 TAG 
 10   
     
   CAA 
 20 TAA 
 7 94
 Two Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Phe AAA 
 1 GAA 
 33   
     
   34
 Asn ATT 
   GTT 
 56   
     
   56
 Lys   
     
   CTT 
 175 TTT 
 105 280
 Asp ATC 
 2 GTC 
 56   
     
   58
 Glu   
     
   CTC 
 38 TTC 
 27 65
 His ATG 
 1 GTG 
 34   
     
   35
 Gln   
     
   CTG 
 18 TTG 
 24 42  Two Box & Other tRNA Sets Isotype tRNA Count by Anticodon Total
 Ile AAT 
 100 GAT 
     
   TAT 
 6 106
 Met   
     
   CAT 
 93   
   93
 Tyr ATA 
 1 GTA 
 25   
     
   26
 Supres   
     
   CTA 
 6 TTA 
   6
 Cys ACA 
 1 GCA 
 35   
     
   36
 Trp   
     
   CCA 
 36   
   36
 SelCys   
     
     
   TCA 
   0

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.