tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 47
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 0
Total tRNAs 47
Intron Summary (tRNAs with introns: 14)
Pro GGG
1
Pro CGG
1
Thr CGT
1
Thr TGT
1
Ser CGA
1
Arg TCT
1
Lys CTT
1
Lys TTT
1
Asp GTC
1
Met CAT
1
Tyr GTA
1
Cys GCA
1
Trp CCA
1
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 1645
Number of Codons: 475352

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
1
TGC
1
3
GCT
2.56
GCC
3.74
GCG
2.18
GCA
1.32
9.8%
GlyACC
 
GCC
1
CCC
1
TCC
1
3
GGT
1.57
GGC
3.4
GGG
2.79
GGA
1.22
8.98%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
1.04
CCC
2.11
CCG
1.21
CCA
0.74
5.1%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
0.81
ACC
1.4
ACG
1.02
ACA
0.99
4.22%
ValAAC
 
GAC
1
CAC
1
TAC
1
3
GTT
2.48
GTC
2.3
GTG
3.16
GTA
1.42
9.36%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
0.6
TCC
1.19
TCG
0.83
TCA
0.57
AGT
0.53
AGC
2.49
 
 
 
 
6.21%
ArgACG
 
GCG
2
CCG
1
TCG
1
 
 
 
 
CCT
1
TCT
1
6
CGT
0.23
CGC
0.42
CGG
0.56
CGA
0.12
 
 
 
 
AGG
5.32
AGA
1.1
7.75%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
5
CTT
1.53
CTC
3.56
CTG
2.98
CTA
2.07
 
 
 
 
TTG
0.67
TTA
0.35
11.16%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
0.57
TTC
2.33
 
 
 
 
2.9%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
0.35
AAC
1.56
 
 
 
 
1.91%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
3.19
AAA
0.78
3.97%
AspATC
 
GTC
1
 
 
 
 
1
GAT
1.36
GAC
2.95
 
 
 
 
4.31%
Glu 
 
 
 
CTC
1
TTC
1
2
 
 
 
 
GAG
6.64
GAA
0.98
7.62%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0.42
CAC
1.09
 
 
 
 
1.51%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
1.48
CAA
0.21
1.69%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
1
TAT
 
2
ATT
0.79
ATC
1.05
 
 
ATA
3.85
5.69%
iMet/Met 
 
 
 
CAT
1/1
 
 
2
 
 
 
 
ATG
1.98
 
 
1.98%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
1
TAC
2.42
 
 
 
 
3.42%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.08
TAG
0.19
TAA
0.08
0.35%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.1
TGC
0.47
 
 
 
 
0.57%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.28
 
 
1.28%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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