tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 46
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 0
Total tRNAs 46
Intron Summary (tRNAs with introns: 16)
Thr GGT
2
Ser CGA
1
Ser TGA
1
Arg CCG
1
Arg CCT
1
Leu TAG
1
Leu CAA
1
Leu TAA
2
Phe GAA
1
Lys CTT
1
Gln CTG
2
Tyr GTA
1
Trp CCA
1
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 1742
Number of Codons: 514545

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
1
TGC
1
3
GCT
2.08
GCC
2.61
GCG
2.1
GCA
1.62
8.41%
GlyACC
 
GCC
1
CCC
1
TCC
1
3
GGT
1.5
GGC
2.7
GGG
1.41
GGA
1.91
7.52%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
1.02
CCC
1.44
CCG
1.11
CCA
1.04
4.61%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
0.69
ACC
1.48
ACG
1.09
ACA
1.96
5.22%
ValAAC
 
GAC
1
CAC
1
TAC
1
3
GTT
2.84
GTC
2.68
GTG
2.67
GTA
1.03
9.22%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
0.8
TCC
0.96
TCG
1.05
TCA
1.03
AGT
0.38
AGC
1.64
 
 
 
 
5.86%
ArgACG
 
GCG
1
CCG
1
TCG
1
 
 
 
 
CCT
1
TCT
1
5
CGT
0.78
CGC
0.78
CGG
0.79
CGA
0.45
 
 
 
 
AGG
1.89
AGA
1.76
6.45%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
5
CTT
2.06
CTC
3.11
CTG
2.17
CTA
1.14
 
 
 
 
TTG
1.63
TTA
0.52
10.63%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
1.46
TTC
2.47
 
 
 
 
3.93%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
0.53
AAC
2.46
 
 
 
 
2.99%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
2.66
AAA
2.79
5.45%
AspATC
 
GTC
1
 
 
 
 
1
GAT
1.56
GAC
2.94
 
 
 
 
4.5%
Glu 
 
 
 
CTC
1
TTC
1
2
 
 
 
 
GAG
4.71
GAA
2.31
7.02%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0.9
CAC
0.9
 
 
 
 
1.8%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
1.71
CAA
0.78
2.49%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
1
TAT
 
2
ATT
1.31
ATC
2.09
 
 
ATA
2.5
5.9%
iMet/Met 
 
 
 
CAT
1/1
 
 
2
 
 
 
 
ATG
2.29
 
 
2.29%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
1.3
TAC
2.04
 
 
 
 
3.34%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.13
TAG
0.1
TAA
0.11
0.34%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.3
TGC
0.54
 
 
 
 
0.84%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.1
 
 
1.1%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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