tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Wed Aug 23 00:22:10 PDT 2017

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Search Mode:                       Archaeal
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Scan for noncanonical introns
Covariance model:                  TRNAinf-arch.cm
                                   TRNAinf-arch-SeC.cm
Infernal first pass cutoff score:  10


Pseudogene checking disabled
Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         1
Seqs w/at least 1 hit:  1
Bases read:             1590757 (x2 for both strands)
Bases in tRNAs:         3723
tRNAs predicted:        46
Av. tRNA length:        80
Script CPU time:        0.20 s
Scan CPU time:          7.43 s
Scan speed:             428.2 Kbp/sec

First pass search(es) ended: Wed Aug 23 00:22:12 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     46
Infernal-confirmed tRNAs:     46
Bases scanned by Infernal:  4643
% seq scanned by Infernal:  0.1 %
Script CPU time:          0.49 s
Infernal CPU time:            68.53 s
Scan speed:               67.8 bp/sec

Infernal analysis of tRNAs ended: Wed Aug 23 00:23:50 PDT 2017

Overall scan speed: 41507.0 bp/sec