tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 46
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 0
Total tRNAs 46
Intron Summary (tRNAs with introns: 6)
Ser CGA
1
Ile TAT
1
Met CAT
1
Tyr GTA
1
Trp CCA
2

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 1602
Number of Codons: 476616

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
1
TGC
1
3
GCT
3.16
GCC
1.57
GCG
1.2
GCA
1.03
6.96%
GlyACC
 
GCC
1
CCC
1
TCC
1
3
GGT
1.37
GGC
1.47
GGG
2.78
GGA
2.14
7.76%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
1.14
CCC
1.44
CCG
1.05
CCA
0.84
4.47%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
1.33
ACC
0.72
ACG
0.99
ACA
0.7
3.74%
ValAAC
 
GAC
1
CAC
1
TAC
1
3
GTT
1.46
GTC
2.15
GTG
2.22
GTA
1.47
7.3%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
0.9
TCC
1.78
TCG
0.95
TCA
1.11
AGT
0.65
AGC
1.83
 
 
 
 
7.22%
ArgACG
 
GCG
1
CCG
1
TCG
1
 
 
 
 
CCT
1
TCT
1
5
CGT
0.08
CGC
0.12
CGG
0.07
CGA
0.06
 
 
 
 
AGG
4.94
AGA
1.7
6.97%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
5
CTT
0.92
CTC
3.45
CTG
2.22
CTA
1.49
 
 
 
 
TTG
1.53
TTA
1.29
10.9%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
0.48
TTC
3.34
 
 
 
 
3.82%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
1.49
AAC
1.32
 
 
 
 
2.81%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
4.12
AAA
1.43
5.55%
AspATC
 
GTC
1
 
 
 
 
1
GAT
3.98
GAC
0.93
 
 
 
 
4.91%
Glu 
 
 
 
CTC
1
TTC
1
2
 
 
 
 
GAG
6.13
GAA
1.99
8.12%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0.71
CAC
0.65
 
 
 
 
1.36%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
1.07
CAA
0.46
1.53%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
 
TAT
1
2
ATT
0.91
ATC
1.93
 
 
ATA
5.33
8.17%
iMet/Met 
 
 
 
CAT
1/1
 
 
2
 
 
 
 
ATG
2.55
 
 
2.55%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
1.4
TAC
2.05
 
 
 
 
3.45%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.18
TAG
0.06
TAA
0.09
0.33%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.1
TGC
0.68
 
 
 
 
0.78%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.13
 
 
1.13%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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