tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 43
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 0
Total tRNAs 43
Intron Summary (tRNAs with introns: 11)
Val CAC
1
Ser GGA
1
Arg CCT
1
Leu CAA
1
Leu TAA
2
Glu TTC
1
Gln CTG
1
iMet CAT
1
Met CAT
1
Tyr GTA
1
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 2215
Number of Codons: 545360

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
1
TGC
1
3
GCT
1.39
GCC
0.5
GCG
0.17
GCA
3.61
5.67%
GlyACC
 
GCC
1
CCC
1
TCC
1
3
GGT
1.94
GGC
0.69
GGG
0.58
GGA
3.09
6.3%
ProAGG
 
GGG
1
CGG
 
TGG
1
2
CCT
1.29
CCC
0.28
CCG
0.17
CCA
1.96
3.7%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
2.15
ACC
0.54
ACG
0.24
ACA
2.57
5.5%
ValAAC
 
GAC
1
CAC
1
TAC
1
3
GTT
2.65
GTC
0.61
GTG
0.7
GTA
2.4
6.36%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
2.1
TCC
0.52
TCG
0.22
TCA
2.76
AGT
1.27
AGC
0.41
 
 
 
 
7.28%
ArgACG
 
GCG
1
CCG
 
TCG
1
 
 
 
 
CCT
1
TCT
1
4
CGT
0.39
CGC
0.1
CGG
0.04
CGA
0.42
 
 
 
 
AGG
0.31
AGA
2.12
3.38%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
5
CTT
1.76
CTC
0.46
CTG
0.45
CTA
1.48
 
 
 
 
TTG
1.62
TTA
2.82
8.59%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
3.42
TTC
1.03
 
 
 
 
4.45%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
3.81
AAC
1.27
 
 
 
 
5.08%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
1.58
AAA
7.04
8.62%
AspATC
 
GTC
1
 
 
 
 
1
GAT
4.79
GAC
1.16
 
 
 
 
5.95%
Glu 
 
 
 
CTC
1
TTC
1
2
 
 
 
 
GAG
1.61
GAA
5.37
6.98%
HisATG
 
GTG
1
 
 
 
 
1
CAT
1.31
CAC
0.47
 
 
 
 
1.78%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
0.65
CAA
2.53
3.18%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
1
TAT
 
2
ATT
5.44
ATC
1.55
 
 
ATA
2.06
9.05%
iMet/Met 
 
 
 
CAT
1/1
 
 
2
 
 
 
 
ATG
2.51
 
 
2.51%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
2.1
TAC
0.89
 
 
 
 
2.99%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.14
TAG
0.13
TAA
0.25
0.52%
CysACA
 
GCA
 
 
 
 
 
0
TGT
0.7
TGC
0.29
 
 
 
 
0.99%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
0.9
 
 
0.9%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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