tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 44
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 0
Total tRNAs 44
Intron Summary (tRNAs with introns: 13)
Val CAC
1
Ser GGA
1
Arg CCT
1
Leu CAA
1
Leu TAA
2
Glu TTC
1
Gln CTG
1
iMet CAT
1
Met CAT
1
Tyr GTA
1
Trp CCA
2
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 1890
Number of Codons: 473022

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
1
TGC
1
3
GCT
1.36
GCC
0.49
GCG
0.19
GCA
3.92
5.96%
GlyACC
 
GCC
1
CCC
1
TCC
1
3
GGT
1.96
GGC
0.75
GGG
0.5
GGA
3.22
6.43%
ProAGG
 
GGG
1
CGG
 
TGG
1
2
CCT
1.39
CCC
0.24
CCG
0.15
CCA
1.99
3.77%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
2.08
ACC
0.6
ACG
0.23
ACA
2.72
5.63%
ValAAC
 
GAC
1
CAC
1
TAC
1
3
GTT
2.78
GTC
0.68
GTG
0.78
GTA
2.3
6.54%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
2.3
TCC
0.47
TCG
0.22
TCA
2.59
AGT
1.19
AGC
0.43
 
 
 
 
7.2%
ArgACG
 
GCG
1
CCG
 
TCG
1
 
 
 
 
CCT
1
TCT
1
4
CGT
0.44
CGC
0.11
CGG
0.04
CGA
0.39
 
 
 
 
AGG
0.31
AGA
2.15
3.44%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
5
CTT
1.77
CTC
0.45
CTG
0.54
CTA
1.35
 
 
 
 
TTG
1.78
TTA
2.55
8.44%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
3.44
TTC
0.98
 
 
 
 
4.42%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
3.34
AAC
1.58
 
 
 
 
4.92%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
1.63
AAA
6.92
8.55%
AspATC
 
GTC
1
 
 
 
 
1
GAT
4.55
GAC
1.47
 
 
 
 
6.02%
Glu 
 
 
 
CTC
1
TTC
1
2
 
 
 
 
GAG
1.56
GAA
5.55
7.11%
HisATG
 
GTG
1
 
 
 
 
1
CAT
1.27
CAC
0.52
 
 
 
 
1.79%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
0.62
CAA
2.6
3.22%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
1
TAT
 
2
ATT
5.03
ATC
1.62
 
 
ATA
2.01
8.66%
iMet/Met 
 
 
 
CAT
1/1
 
 
2
 
 
 
 
ATG
2.45
 
 
2.45%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
2.1
TAC
0.97
 
 
 
 
3.07%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.1
TAG
0.1
TAA
0.2
0.4%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.7
TGC
0.25
 
 
 
 
0.95%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
0.91
 
 
0.91%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
-