tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 46
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 0
Total tRNAs 46
Intron Summary (tRNAs with introns: 14)
Val CAC
1
Ser GGA
1
Arg CCT
1
Leu CAA
1
Leu TAA
2
Glu TTC
1
Gln CTG
2
iMet CAT
1
Met CAT
1
Tyr GTA
1
Trp CCA
2
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 2017
Number of Codons: 622995

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
1
TGC
1
3
GCT
0.65
GCC
3.26
GCG
2.74
GCA
2.56
9.21%
GlyACC
 
GCC
1
CCC
1
TCC
1
3
GGT
0.59
GGC
4.82
GGG
2.87
GGA
1.25
9.53%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
0.54
CCC
2.07
CCG
1.95
CCA
0.65
5.21%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
0.56
ACC
1.78
ACG
1.58
ACA
1.32
5.24%
ValAAC
 
GAC
1
CAC
1
TAC
1
3
GTT
0.63
GTC
2.15
GTG
2.84
GTA
1.52
7.14%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
0.7
TCC
1.71
TCG
1.74
TCA
0.87
AGT
0.34
AGC
1.64
 
 
 
 
7%
ArgACG
 
GCG
1
CCG
1
TCG
1
 
 
 
 
CCT
1
TCT
1
5
CGT
0.25
CGC
1.45
CGG
1.33
CGA
0.17
 
 
 
 
AGG
2.47
AGA
0.69
6.36%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
5
CTT
1.26
CTC
2.15
CTG
3.3
CTA
0.66
 
 
 
 
TTG
0.6
TTA
0.27
8.24%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
1.94
TTC
1.59
 
 
 
 
3.53%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
0.82
AAC
2.13
 
 
 
 
2.95%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
2.92
AAA
1.21
4.13%
AspATC
 
GTC
1
 
 
 
 
1
GAT
2.42
GAC
4.08
 
 
 
 
6.5%
Glu 
 
 
 
CTC
1
TTC
1
2
 
 
 
 
GAG
4.58
GAA
1.68
6.26%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0.66
CAC
1.42
 
 
 
 
2.08%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
1.99
CAA
0.38
2.37%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
1
TAT
 
2
ATT
0.65
ATC
1.71
 
 
ATA
3.51
5.87%
iMet/Met 
 
 
 
CAT
1/1
 
 
2
 
 
 
 
ATG
2.89
 
 
2.89%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
1.1
TAC
1.92
 
 
 
 
3.02%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.13
TAG
0.14
TAA
0.06
0.33%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.2
TGC
0.91
 
 
 
 
1.11%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
0.86
 
 
0.86%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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