tRNA Gene Summary

Overview
tRNAs Decoding Standard 20 AA 49
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA) 0
tRNAs with undetermined or unknown isotypes 1
Predicted pseudogenes 0
Total tRNAs 50
Intron Summary (tRNAs with introns: 3)
Arg TCT
1
Met CAT
1
Trp CCA
1

The codon usage of this genome was generated from protein-coding genes annotated in RefSeq.
Number of CDS: 4240
Number of Codons: 1207818

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
1
TGC
1
3
GCT
1.29
GCC
3.92
GCG
3.58
GCA
1.57
10.36%
GlyACC
 
GCC
1
CCC
1
TCC
1
3
GGT
1.38
GGC
3.95
GGG
1.95
GGA
0.97
8.25%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
0.31
CCC
1.17
CCG
2.39
CCA
0.71
4.58%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
0.78
ACC
2.32
ACG
2.75
ACA
1.04
6.89%
ValAAC
 
GAC
1
CAC
1
TAC
1
3
GTT
1.14
GTC
4.95
GTG
2.04
GTA
0.47
8.6%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
0.4
TCC
1.06
TCG
1.83
TCA
0.59
AGT
0.61
AGC
1.44
 
 
 
 
5.93%
ArgACG
 
GCG
1
CCG
1
TCG
1
 
 
 
 
CCT
1
TCT
1
5
CGT
0.72
CGC
2.03
CGG
2
CGA
0.95
 
 
 
 
AGG
0.19
AGA
0.23
6.12%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
5
CTT
0.87
CTC
3.83
CTG
3.04
CTA
0.38
 
 
 
 
TTG
0.48
TTA
0.17
8.77%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
0.6
TTC
2.64
 
 
 
 
3.24%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
0.48
AAC
2.09
 
 
 
 
2.57%
Lys 
 
 
 
CTT
1
TTT
2
3
 
 
 
 
AAG
1.23
AAA
0.76
1.99%
AspATC
 
GTC
2
 
 
 
 
2
GAT
1.74
GAC
6.55
 
 
 
 
8.29%
Glu 
 
 
 
CTC
2
TTC
1
3
 
 
 
 
GAG
4.98
GAA
3.07
8.05%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0.36
CAC
1.64
 
 
 
 
2%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
2.57
CAA
0.54
3.11%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
 
 
TAT
 
1
ATT
0.92
ATC
3.08
 
 
ATA
0.36
4.36%
Met 
 
 
 
CAT
3
 
 
3
 
 
 
 
ATG
1.87
 
 
1.87%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
0.5
TAC
2.14
 
 
 
 
2.64%
Supres 
 
 
 
CTA
 
TTA
 
0
Stop 
 
 
 
TAG
0.08
TAA
0.09
0.17%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.4
TGC
0.31
 
 
 
 
0.71%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.15
 
 
1.15%
SelCys 
 
 
 
 
 
TCA
 
0
Stop 
 
 
 
 
 
TGA
0.18
0.18%