tRNA Gene Summary

Overview
tRNAs Decoding Standard 20 AA 47
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 0
Total tRNAs 47
Intron Summary (tRNAs with introns: 3)
Met CAT
2
Trp CCA
1

The codon usage of this genome was generated from protein-coding genes annotated in RefSeq.
Number of CDS: 2844
Number of Codons: 803555

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
2
TGC
1
4
GCT
0.72
GCC
5.07
GCG
5.43
GCA
0.99
12.21%
GlyACC
 
GCC
1
CCC
1
TCC
1
3
GGT
0.85
GGC
4.43
GGG
2.15
GGA
0.64
8.07%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
0.18
CCC
1.64
CCG
2.3
CCA
0.47
4.59%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
0.4
ACC
2.95
ACG
2.95
ACA
0.54
6.84%
ValAAC
 
GAC
1
CAC
1
TAC
1
3
GTT
0.8
GTC
4.74
GTG
3.4
GTA
0.27
9.21%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
0.2
TCC
1.17
TCG
1.86
TCA
0.35
AGT
0.39
AGC
1.54
 
 
 
 
5.51%
ArgACG
 
GCG
1
CCG
1
TCG
1
 
 
 
 
CCT
1
TCT
1
5
CGT
0.54
CGC
3.02
CGG
2.07
CGA
0.67
 
 
 
 
AGG
0.15
AGA
0.15
6.6%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
5
CTT
0.5
CTC
4.08
CTG
2.99
CTA
0.18
 
 
 
 
TTG
0.7
TTA
0.12
8.57%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
0.26
TTC
2.86
 
 
 
 
3.12%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
0.25
AAC
2.02
 
 
 
 
2.27%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
1.16
AAA
0.65
1.81%
AspATC
 
GTC
1
 
 
 
 
1
GAT
1.24
GAC
7.54
 
 
 
 
8.78%
Glu 
 
 
 
CTC
1
TTC
1
2
 
 
 
 
GAG
5.08
GAA
1.94
7.02%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0.26
CAC
1.95
 
 
 
 
2.21%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
2.3
CAA
0.51
2.81%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
 
 
TAT
 
1
ATT
0.4
ATC
3.27
 
 
ATA
0.12
3.79%
Met 
 
 
 
CAT
3
 
 
3
 
 
 
 
ATG
1.61
 
 
1.61%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
0.3
TAC
2.28
 
 
 
 
2.58%
Supres 
 
 
 
CTA
 
TTA
 
0
Stop 
 
 
 
TAG
0.11
TAA
0.09
0.2%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.3
TGC
0.42
 
 
 
 
0.72%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.11
 
 
1.11%
SelCys 
 
 
 
 
 
TCA
 
0
Stop 
 
 
 
 
 
TGA
0.2
0.2%