tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 58
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 0
Total tRNAs 58
Intron Summary (tRNAs with introns: 4)
Arg TCG
1
Met CAT
1
Tyr GTA
1
Trp CCA
1

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 4540
Number of Codons: 1420997

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
1
TGC
1
3
GCT
1.8
GCC
1.8
GCG
0.71
GCA
2.54
6.85%
GlyACC
 
GCC
3
CCC
1
TCC
1
5
GGT
1.23
GGC
1.5
GGG
1.79
GGA
2.7
7.22%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
1.42
CCC
0.98
CCG
0.97
CCA
0.6
3.97%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
1.36
ACC
1.7
ACG
0.78
ACA
1.57
5.41%
ValAAC
 
GAC
2
CAC
1
TAC
1
4
GTT
2.09
GTC
1.59
GTG
1.39
GTA
1.77
6.84%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
1.2
TCC
1.45
TCG
0.71
TCA
1.23
AGT
1.03
AGC
1.24
 
 
 
 
6.86%
ArgACG
 
GCG
1
CCG
1
TCG
1
 
 
 
 
CCT
1
TCT
1
5
CGT
0.4
CGC
0.49
CGG
0.56
CGA
0.3
 
 
 
 
AGG
1.44
AGA
1.28
4.47%
LeuAAG
 
GAG
2
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
6
CTT
3.02
CTC
1.79
CTG
2.44
CTA
0.45
 
 
 
 
TTG
0.8
TTA
0.93
9.43%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
2
 
 
 
 
2
TTT
2.47
TTC
1.96
 
 
 
 
4.43%
AsnATT
 
GTT
2
 
 
 
 
2
AAT
2.28
AAC
2.19
 
 
 
 
4.47%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
2.28
AAA
4.25
6.53%
AspATC
 
GTC
1
 
 
 
 
1
GAT
2.89
GAC
2.42
 
 
 
 
5.31%
Glu 
 
 
 
CTC
1
TTC
2
3
 
 
 
 
GAG
2.48
GAA
5.47
7.95%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0.9
CAC
0.77
 
 
 
 
1.67%
Gln 
 
 
 
CTG
1
TTG
2
3
 
 
 
 
CAG
1.88
CAA
0.65
2.53%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
2
CAT
1
TAT
 
3
ATT
2.69
ATC
2.54
 
 
ATA
2.11
7.34%
iMet/Met 
 
 
 
CAT
2/1
 
 
3
 
 
 
 
ATG
2.33
 
 
2.33%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
2
TAC
1.68
 
 
 
 
3.68%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.15
TAG
0.02
TAA
0.16
0.33%
CysACA
 
GCA
3
 
 
 
 
3
TGT
0.5
TGC
0.67
 
 
 
 
1.17%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.05
 
 
1.05%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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