tRNA Gene Summary

Overview
tRNAs Decoding Standard 20 AA 58
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 0
Total tRNAs 58
Intron Summary (tRNAs with introns: 4)
Arg TCG
1
Met CAT
1
Tyr GTA
1
Trp CCA
1

The codon usage of this genome was generated from protein-coding genes annotated in RefSeq.
Number of CDS: 3371
Number of Codons: 1028995

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
1
TGC
2
4
GCT
1.99
GCC
1.56
GCG
0.63
GCA
2.86
7.04%
GlyACC
 
GCC
3
CCC
1
TCC
1
5
GGT
1.26
GGC
1.47
GGG
1.72
GGA
2.81
7.26%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
1.67
CCC
0.86
CCG
0.84
CCA
0.65
4.02%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
1.39
ACC
1.39
ACG
0.6
ACA
1.72
5.1%
ValAAC
 
GAC
2
CAC
1
TAC
1
4
GTT
2.22
GTC
1.48
GTG
1.28
GTA
1.88
6.86%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
1.3
TCC
1.32
TCG
0.54
TCA
1.39
AGT
0.92
AGC
1.24
 
 
 
 
6.71%
ArgACG
 
GCG
1
CCG
1
TCG
1
 
 
 
 
CCT
1
TCT
1
5
CGT
0.42
CGC
0.53
CGG
0.41
CGA
0.2
 
 
 
 
AGG
1.67
AGA
1.41
4.64%
LeuAAG
 
GAG
2
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
6
CTT
3.47
CTC
1.73
CTG
2.33
CTA
0.37
 
 
 
 
TTG
0.59
TTA
0.9
9.39%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
2
 
 
 
 
2
TTT
2.48
TTC
1.79
 
 
 
 
4.27%
AsnATT
 
GTT
2
 
 
 
 
2
AAT
2.34
AAC
2.01
 
 
 
 
4.35%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
2.16
AAA
4.61
6.77%
AspATC
 
GTC
1
 
 
 
 
1
GAT
2.83
GAC
2.41
 
 
 
 
5.24%
Glu 
 
 
 
CTC
1
TTC
2
3
 
 
 
 
GAG
2.43
GAA
5.72
8.15%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0.9
CAC
0.77
 
 
 
 
1.67%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
1.97
CAA
0.5
2.47%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
2
 
 
TAT
 
2
ATT
2.97
ATC
2.23
 
 
ATA
2.4
7.6%
Met 
 
 
 
CAT
4
 
 
4
 
 
 
 
ATG
2.39
 
 
2.39%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
2
TAC
1.5
 
 
 
 
3.5%
Supres 
 
 
 
CTA
 
TTA
 
0
Stop 
 
 
 
TAG
0.01
TAA
0.18
0.19%
CysACA
 
GCA
3
 
 
 
 
3
TGT
0.5
TGC
0.69
 
 
 
 
1.19%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
0.94
 
 
0.94%
SelCys 
 
 
 
 
 
TCA
 
0
Stop 
 
 
 
 
 
TGA
0.14
0.14%