tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0 (Sept 2015) scan results (on host woese.soe.ucsc.edu)
Started: Sun Sep 27 03:21:51 PDT 2015

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Search Mode:                 Archaeal
Searching with:              Infernal only
Covariance model:            infernal-1.1/TRNAinf-arch.cm

Pseudogene checking disabled
Reporting HMM/2' structure score breakdown
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Infernal Stats:
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Sequences read:           1
Infernal-confirmed tRNAs:     58
Bases scanned by Infernal:  10855780
% seq scanned by Infernal:  100.0 %
Script CPU time:          3.36 s
Infernal CPU time:            6499.67 s
Scan speed:               1670.2 bp/sec

Infernal analysis of tRNAs ended: Sun Sep 27 03:28:17 PDT 2015

Overall scan speed: 1669.3 bp/sec

tRNAs decoding Standard 20 AA:              58
Selenocysteine tRNAs (TCA):                 0
Possible suppressor tRNAs (CTA,TTA):        0
tRNAs with undetermined/unknown isotypes:   0
Predicted pseudogenes:                      0
                                            -------
Total tRNAs:                                58

tRNAs with introns:     	5

| Thr-TGT: 1 | Arg-TCG: 1 | Met-CAT: 1 | Tyr-GTA: 1 | Trp-CCA: 1 |

Isotype / Anticodon Counts:

Ala   : 3	  AGC:         GGC: 1       CGC: 1       TGC: 1     
Gly   : 5	  ACC:         GCC: 3       CCC: 1       TCC: 1     
Pro   : 3	  AGG:         GGG: 1       CGG: 1       TGG: 1     
Thr   : 4	  AGT:         GGT: 1       CGT: 1       TGT: 2     
Val   : 4	  AAC:         GAC: 2       CAC: 1       TAC: 1     
Ser   : 4	  AGA:         GGA: 1       CGA: 1       TGA: 1       ACT:         GCT: 1     
Arg   : 5	  ACG:         GCG: 1       CCG: 1       TCG: 1       CCT: 1       TCT: 1     
Leu   : 6	  AAG:         GAG: 2       CAG: 1       TAG: 1       CAA: 1       TAA: 1     
Phe   : 2	  AAA:         GAA: 2                               
Asn   : 2	  ATT:         GTT: 2                               
Lys   : 2	                            CTT: 1       TTT: 1     
Asp   : 1	  ATC:         GTC: 1                               
Glu   : 3	                            CTC: 1       TTC: 2     
His   : 1	  ATG:         GTG: 1                               
Gln   : 2	                            CTG: 1       TTG: 1     
Ile   : 2	  AAT:         GAT: 2                    TAT:       
Met   : 4	                            CAT: 4                  
Tyr   : 1	  ATA:         GTA: 1                               
Supres: 0	                            CTA:         TTA:       
Cys   : 3	  ACA:         GCA: 3                               
Trp   : 1	                            CCA: 1                  
SelCys: 0	                                         TCA: