tRNA Gene Summary

Overview
tRNAs Decoding Standard 20 AA 58
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 0
Total tRNAs 58
Intron Summary (tRNAs with introns: 5)
Thr TGT
1
Arg TCG
1
Met CAT
1
Tyr GTA
1
Trp CCA
1

The codon usage of this genome was generated from protein-coding genes annotated in RefSeq.
Number of CDS: 4401
Number of Codons: 1352241

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
1
TGC
1
3
GCT
1.83
GCC
1.82
GCG
0.69
GCA
2.58
6.92%
GlyACC
 
GCC
3
CCC
1
TCC
1
5
GGT
1.23
GGC
1.46
GGG
1.81
GGA
2.71
7.21%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
1.43
CCC
0.99
CCG
0.96
CCA
0.59
3.97%
ThrAGT
 
GGT
1
CGT
1
TGT
2
4
ACT
1.35
ACC
1.73
ACG
0.77
ACA
1.62
5.47%
ValAAC
 
GAC
2
CAC
1
TAC
1
4
GTT
2.11
GTC
1.6
GTG
1.37
GTA
1.81
6.89%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
1.2
TCC
1.5
TCG
0.68
TCA
1.24
AGT
1
AGC
1.21
 
 
 
 
6.83%
ArgACG
 
GCG
1
CCG
1
TCG
1
 
 
 
 
CCT
1
TCT
1
5
CGT
0.41
CGC
0.47
CGG
0.56
CGA
0.29
 
 
 
 
AGG
1.45
AGA
1.23
4.41%
LeuAAG
 
GAG
2
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
6
CTT
3.06
CTC
1.8
CTG
2.39
CTA
0.44
 
 
 
 
TTG
0.75
TTA
0.91
9.35%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
2
 
 
 
 
2
TTT
2.4
TTC
1.89
 
 
 
 
4.29%
AsnATT
 
GTT
2
 
 
 
 
2
AAT
2.28
AAC
2.24
 
 
 
 
4.52%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
2.28
AAA
4.36
6.64%
AspATC
 
GTC
1
 
 
 
 
1
GAT
2.94
GAC
2.48
 
 
 
 
5.42%
Glu 
 
 
 
CTC
1
TTC
2
3
 
 
 
 
GAG
2.43
GAA
5.53
7.96%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0.89
CAC
0.75
 
 
 
 
1.64%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
1.87
CAA
0.63
2.5%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
2
 
 
TAT
 
2
ATT
2.73
ATC
2.55
 
 
ATA
2.11
7.39%
Met 
 
 
 
CAT
4
 
 
4
 
 
 
 
ATG
2.33
 
 
2.33%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
2
TAC
1.68
 
 
 
 
3.68%
Supres 
 
 
 
CTA
 
TTA
 
0
Stop 
 
 
 
TAG
0.02
TAA
0.15
0.17%
CysACA
 
GCA
3
 
 
 
 
3
TGT
0.5
TGC
0.66
 
 
 
 
1.16%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.04
 
 
1.04%
SelCys 
 
 
 
 
 
TCA
 
0
Stop 
 
 
 
 
 
TGA
0.15
0.15%