tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 46
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 0
Total tRNAs 46
Intron Summary (tRNAs with introns: 31)
Ala TGC
1
Gly TCC
2
Ser GGA
1
Ser CGA
2
Ser TGA
2
Arg CCG
1
Arg TCT
1
Leu CAG
2
Leu TAG
1
Leu CAA
1
Leu TAA
2
Asn GTT
1
Lys CTT
1
Lys TTT
1
Asp GTC
1
Glu TTC
1
His GTG
1
Gln CTG
2
Gln TTG
1
iMet CAT
1
Tyr GTA
2
Cys GCA
1
Trp CCA
2
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 3123
Number of Codons: 733457

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
1
TGC
1
3
GCT
0.89
GCC
2.69
GCG
2.8
GCA
2.98
9.36%
GlyACC
 
GCC
1
CCC
1
TCC
1
3
GGT
0.55
GGC
4.42
GGG
1.14
GGA
1.34
7.45%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
0.72
CCC
0.84
CCG
1.68
CCA
0.84
4.08%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
0.77
ACC
1.5
ACG
1.76
ACA
1.24
5.27%
ValAAC
 
GAC
1
CAC
1
TAC
1
3
GTT
0.92
GTC
2.77
GTG
2.76
GTA
1.17
7.62%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
0.9
TCC
0.94
TCG
1.58
TCA
1.01
AGT
0.35
AGC
1.96
 
 
 
 
6.74%
ArgACG
 
GCG
1
CCG
1
TCG
1
 
 
 
 
CCT
1
TCT
1
5
CGT
0.2
CGC
1.52
CGG
0.59
CGA
0.19
 
 
 
 
AGG
2.13
AGA
0.74
5.37%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
5
CTT
2.32
CTC
1.73
CTG
2.84
CTA
0.57
 
 
 
 
TTG
0.91
TTA
0.26
8.63%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
2.21
TTC
1.64
 
 
 
 
3.85%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
0.87
AAC
2.79
 
 
 
 
3.66%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
4.44
AAA
2.01
6.45%
AspATC
 
GTC
1
 
 
 
 
1
GAT
1.23
GAC
4.25
 
 
 
 
5.48%
Glu 
 
 
 
CTC
1
TTC
1
2
 
 
 
 
GAG
3.49
GAA
2.68
6.17%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0.48
CAC
1.4
 
 
 
 
1.88%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
2.43
CAA
0.75
3.18%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
1
TAT
 
2
ATT
1.16
ATC
2.59
 
 
ATA
2.65
6.4%
iMet/Met 
 
 
 
CAT
1/1
 
 
2
 
 
 
 
ATG
2.77
 
 
2.77%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
0.9
TAC
2.22
 
 
 
 
3.12%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.14
TAG
0.16
TAA
0.13
0.43%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.1
TGC
0.85
 
 
 
 
0.95%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
0.99
 
 
0.99%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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