tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Tue Aug 22 17:30:29 PDT 2017

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Search Mode:                       Archaeal
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Scan for noncanonical introns
Covariance model:                  TRNAinf-arch.cm
                                   TRNAinf-arch-SeC.cm
Infernal first pass cutoff score:  10


Pseudogene checking disabled
Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         1
Seqs w/at least 1 hit:  1
Bases read:             1843267 (x2 for both strands)
Bases in tRNAs:         4758
tRNAs predicted:        51
Av. tRNA length:        93
Script CPU time:        0.24 s
Scan CPU time:          14.81 s
Scan speed:             248.9 Kbp/sec

First pass search(es) ended: Tue Aug 22 17:30:31 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     51
Infernal-confirmed tRNAs:     48
Bases scanned by Infernal:  5778
% seq scanned by Infernal:  0.2 %
Script CPU time:          0.50 s
Infernal CPU time:            79.99 s
Scan speed:               72.2 bp/sec

Infernal analysis of tRNAs ended: Tue Aug 22 17:32:20 PDT 2017

Overall scan speed: 38586.3 bp/sec