tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 47
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 1
Predicted pseudogenes 0
Total tRNAs 48
Intron Summary (tRNAs with introns: 10)
Pro GGG
1
Thr CGT
1
Thr TGT
1
Ser CGA
1
Leu CAG
1
Phe GAA
1
Met CAT
1
Tyr GTA
1
Cys GCA
1
Trp CCA
1
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 1986
Number of Codons: 542167

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
1
TGC
1
3
GCT
2.61
GCC
2.25
GCG
2.65
GCA
2
9.51%
GlyACC
 
GCC
1
CCC
1
TCC
1
3
GGT
2.12
GGC
3.1
GGG
1.41
GGA
0.84
7.47%
ProAGG
 
GGG
1
CGG
 
TGG
1
2
CCT
0.94
CCC
1.23
CCG
1.52
CCA
1.28
4.97%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
0.86
ACC
1.11
ACG
1.42
ACA
1.1
4.49%
ValAAC
 
GAC
1
CAC
1
TAC
1
3
GTT
2.19
GTC
2.32
GTG
3.36
GTA
2.02
9.89%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
0.5
TCC
0.55
TCG
0.85
TCA
0.45
AGT
0.87
AGC
1.84
 
 
 
 
5.06%
ArgACG
 
GCG
1
CCG
1
TCG
1
 
 
 
 
CCT
1
TCT
1
5
CGT
1.25
CGC
1.6
CGG
0.55
CGA
0.37
 
 
 
 
AGG
2.96
AGA
1.38
8.11%
LeuAAG
 
GAG
1
CAG
2
TAG
1
 
 
 
 
CAA
1
TAA
1
6
CTT
1.72
CTC
3.14
CTG
2.05
CTA
2.67
 
 
 
 
TTG
1.25
TTA
0.52
11.35%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
0.67
TTC
1.95
 
 
 
 
2.62%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
0.56
AAC
1.57
 
 
 
 
2.13%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
3.56
AAA
0.93
4.49%
AspATC
 
GTC
1
 
 
 
 
1
GAT
1.82
GAC
2.48
 
 
 
 
4.3%
Glu 
 
 
 
CTC
1
TTC
1
2
 
 
 
 
GAG
6.54
GAA
1.29
7.83%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0.63
CAC
1.24
 
 
 
 
1.87%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
1.18
CAA
0.53
1.71%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
1
TAT
 
2
ATT
0.92
ATC
1.69
 
 
ATA
3.24
5.85%
iMet/Met 
 
 
 
CAT
2/1
 
 
3
 
 
 
 
ATG
1.91
 
 
1.91%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
1.2
TAC
2.27
 
 
 
 
3.47%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.11
TAG
0.15
TAA
0.11
0.37%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.4
TGC
0.59
 
 
 
 
0.99%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.36
 
 
1.36%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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