tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Tue Aug 22 17:50:09 PDT 2017

------------------------------------------------------------
Search Mode:                       Archaeal
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Scan for noncanonical introns
Covariance model:                  TRNAinf-arch.cm
                                   TRNAinf-arch-SeC.cm
Infernal first pass cutoff score:  10


Pseudogene checking disabled
Reporting HMM/2' structure score breakdown
------------------------------------------------------------

First-pass Stats:
---------------
Sequences read:         1
Seqs w/at least 1 hit:  1
Bases read:             2061920 (x2 for both strands)
Bases in tRNAs:         4049
tRNAs predicted:        47
Av. tRNA length:        86
Script CPU time:        0.27 s
Scan CPU time:          9.00 s
Scan speed:             458.2 Kbp/sec

First pass search(es) ended: Tue Aug 22 17:50:11 PDT 2017

Infernal Stats:
-----------
Candidate tRNAs read:     47
Infernal-confirmed tRNAs:     46
Bases scanned by Infernal:  4989
% seq scanned by Infernal:  0.1 %
Script CPU time:          0.48 s
Infernal CPU time:            65.29 s
Scan speed:               76.4 bp/sec

Infernal analysis of tRNAs ended: Tue Aug 22 17:51:39 PDT 2017

Overall scan speed: 54955.2 bp/sec