tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 46
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 0
Total tRNAs 46
Intron Summary (tRNAs with introns: 21)
Gly CCC
1
Gly TCC
1
Pro GGG
1
Thr CGT
1
Thr TGT
1
Ser CGA
1
Arg CCT
1
Arg TCT
1
Leu CAG
1
Leu TAG
1
Phe GAA
1
Asn GTT
1
Lys CTT
1
Lys TTT
1
Glu CTC
1
Glu TTC
1
Met CAT
1
Tyr GTA
1
Cys GCA
1
Trp CCA
1
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 2146
Number of Codons: 592728

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
1
TGC
1
3
GCT
2.19
GCC
0.75
GCG
0.48
GCA
2.18
5.6%
GlyACC
 
GCC
1
CCC
1
TCC
1
3
GGT
2.45
GGC
0.68
GGG
0.84
GGA
2.8
6.77%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
1.58
CCC
0.56
CCG
0.3
CCA
1.44
3.88%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
1.79
ACC
0.73
ACG
0.45
ACA
1.87
4.84%
ValAAC
 
GAC
1
CAC
1
TAC
1
3
GTT
2.65
GTC
0.87
GTG
1.41
GTA
2.83
7.76%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
1.5
TCC
0.76
TCG
0.4
TCA
1.8
AGT
1.7
AGC
0.66
 
 
 
 
6.82%
ArgACG
 
GCG
1
CCG
1
TCG
1
 
 
 
 
CCT
1
TCT
1
5
CGT
0.13
CGC
0.03
CGG
0.03
CGA
0.12
 
 
 
 
AGG
1.56
AGA
2.68
4.55%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
5
CTT
1.67
CTC
0.69
CTG
0.84
CTA
1.85
 
 
 
 
TTG
1.39
TTA
3.69
10.13%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
2.63
TTC
1.6
 
 
 
 
4.23%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
3.08
AAC
1.71
 
 
 
 
4.79%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
3.37
AAA
4.13
7.5%
AspATC
 
GTC
1
 
 
 
 
1
GAT
3.29
GAC
1.59
 
 
 
 
4.88%
Glu 
 
 
 
CTC
1
TTC
1
2
 
 
 
 
GAG
3.12
GAA
3.69
6.81%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0.9
CAC
0.41
 
 
 
 
1.31%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
0.95
CAA
1.32
2.27%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
1
TAT
 
2
ATT
3.04
ATC
1.05
 
 
ATA
5.09
9.18%
iMet/Met 
 
 
 
CAT
1/1
 
 
2
 
 
 
 
ATG
2.11
 
 
2.11%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
2.9
TAC
1.61
 
 
 
 
4.51%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.12
TAG
0.07
TAA
0.17
0.36%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.4
TGC
0.17
 
 
 
 
0.57%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
0.99
 
 
0.99%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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