tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Tue Aug 22 17:53:09 PDT 2017

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Search Mode:                       Archaeal
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Scan for noncanonical introns
Covariance model:                  TRNAinf-arch.cm
                                   TRNAinf-arch-SeC.cm
Infernal first pass cutoff score:  10


Pseudogene checking disabled
Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         1
Seqs w/at least 1 hit:  1
Bases read:             2465177 (x2 for both strands)
Bases in tRNAs:         4168
tRNAs predicted:        48
Av. tRNA length:        86
Script CPU time:        0.30 s
Scan CPU time:          10.71 s
Scan speed:             460.4 Kbp/sec

First pass search(es) ended: Tue Aug 22 17:53:10 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     48
Infernal-confirmed tRNAs:     47
Bases scanned by Infernal:  5128
% seq scanned by Infernal:  0.1 %
Script CPU time:          0.51 s
Infernal CPU time:            66.59 s
Scan speed:               77.0 bp/sec

Infernal analysis of tRNAs ended: Tue Aug 22 17:54:40 PDT 2017

Overall scan speed: 63120.7 bp/sec