tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 47
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 0
Total tRNAs 47
Intron Summary (tRNAs with introns: 20)
Pro GGG
1
Thr CGT
1
Thr TGT
1
Ser CGA
1
Arg CCT
1
Arg TCT
1
Leu CAA
1
Leu TAA
1
Asn GTT
1
Lys CTT
1
Lys TTT
1
Glu CTC
1
Glu TTC
1
Ile GAT
1
iMet CAT
1
Met CAT
1
Tyr GTA
1
Cys GCA
2
Trp CCA
1
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 2601
Number of Codons: 710270

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
1
TGC
1
3
GCT
2.28
GCC
0.7
GCG
0.66
GCA
2.06
5.7%
GlyACC
 
GCC
1
CCC
1
TCC
1
3
GGT
2.24
GGC
0.68
GGG
0.88
GGA
2.73
6.53%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
1.28
CCC
0.51
CCG
0.37
CCA
1.72
3.88%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
2.09
ACC
0.61
ACG
0.58
ACA
1.43
4.71%
ValAAC
 
GAC
1
CAC
1
TAC
1
3
GTT
2.83
GTC
0.62
GTG
1.01
GTA
2.9
7.36%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
1.5
TCC
0.68
TCG
0.46
TCA
1.63
AGT
1.69
AGC
0.7
 
 
 
 
6.66%
ArgACG
 
GCG
1
CCG
1
TCG
1
 
 
 
 
CCT
1
TCT
1
5
CGT
0.14
CGC
0.04
CGG
0.03
CGA
0.12
 
 
 
 
AGG
1.52
AGA
2.53
4.38%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
2
TAA
1
6
CTT
1.52
CTC
0.53
CTG
0.46
CTA
1.91
 
 
 
 
TTG
1.48
TTA
4.36
10.26%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
2.69
TTC
1.64
 
 
 
 
4.33%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
3.46
AAC
1.57
 
 
 
 
5.03%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
3.41
AAA
4.14
7.55%
AspATC
 
GTC
1
 
 
 
 
1
GAT
3.56
GAC
1.15
 
 
 
 
4.71%
Glu 
 
 
 
CTC
1
TTC
1
2
 
 
 
 
GAG
2.82
GAA
3.98
6.8%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0.86
CAC
0.43
 
 
 
 
1.29%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
0.5
CAA
1.58
2.08%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
1
TAT
 
2
ATT
3.52
ATC
1.01
 
 
ATA
5.2
9.73%
iMet/Met 
 
 
 
CAT
1/1
 
 
2
 
 
 
 
ATG
2.15
 
 
2.15%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
3.2
TAC
1.56
 
 
 
 
4.76%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.11
TAG
0.07
TAA
0.18
0.36%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.4
TGC
0.19
 
 
 
 
0.59%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.03
 
 
1.03%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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