tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Tue Aug 22 18:06:58 PDT 2017

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Search Mode:                       Archaeal
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Scan for noncanonical introns
Covariance model:                  TRNAinf-arch.cm
                                   TRNAinf-arch-SeC.cm
Infernal first pass cutoff score:  10


Pseudogene checking disabled
Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         1
Seqs w/at least 1 hit:  1
Bases read:             2589840 (x2 for both strands)
Bases in tRNAs:         4093
tRNAs predicted:        48
Av. tRNA length:        85
Script CPU time:        0.33 s
Scan CPU time:          11.12 s
Scan speed:             465.8 Kbp/sec

First pass search(es) ended: Tue Aug 22 18:06:59 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     48
Infernal-confirmed tRNAs:     47
Bases scanned by Infernal:  5053
% seq scanned by Infernal:  0.1 %
Script CPU time:          0.53 s
Infernal CPU time:            63.47 s
Scan speed:               79.6 bp/sec

Infernal analysis of tRNAs ended: Tue Aug 22 18:08:23 PDT 2017

Overall scan speed: 68650.5 bp/sec