tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 46
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 0
Total tRNAs 46
Intron Summary (tRNAs with introns: 16)
Ala TGC
1
Pro GGG
1
Thr CGT
1
Thr TGT
1
Val TAC
1
Ser CGA
1
Leu CAA
1
Asn GTT
1
Glu CTC
1
His GTG
1
Gln CTG
1
Gln TTG
1
Met CAT
1
Tyr GTA
1
Cys GCA
1
Trp CCA
1

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 1414
Number of Codons: 411236

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
1
TGC
1
3
GCT
1.58
GCC
2.83
GCG
2.29
GCA
0.94
7.64%
GlyACC
 
GCC
1
CCC
1
TCC
1
3
GGT
1.61
GGC
2.85
GGG
2.43
GGA
0.79
7.68%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
0.78
CCC
1.71
CCG
1.45
CCA
0.66
4.6%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
0.8
ACC
1.41
ACG
1.6
ACA
0.93
4.74%
ValAAC
 
GAC
1
CAC
1
TAC
1
3
GTT
1.42
GTC
4.14
GTG
3.27
GTA
2.07
10.9%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
0.7
TCC
1.12
TCG
1.34
TCA
0.38
AGT
0.72
AGC
2.13
 
 
 
 
6.39%
ArgACG
 
GCG
1
CCG
1
TCG
1
 
 
 
 
CCT
1
TCT
1
5
CGT
0.21
CGC
0.34
CGG
0.36
CGA
0.12
 
 
 
 
AGG
4.09
AGA
1.53
6.65%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
5
CTT
0.8
CTC
3.5
CTG
2.8
CTA
2.02
 
 
 
 
TTG
1.45
TTA
0.68
11.25%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
0.54
TTC
3
 
 
 
 
3.54%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
0.28
AAC
2.44
 
 
 
 
2.72%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
4.24
AAA
1.15
5.39%
AspATC
 
GTC
1
 
 
 
 
1
GAT
0.53
GAC
4.01
 
 
 
 
4.54%
Glu 
 
 
 
CTC
1
TTC
1
2
 
 
 
 
GAG
5.99
GAA
1.03
7.02%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0.13
CAC
1.37
 
 
 
 
1.5%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
1.41
CAA
0.36
1.77%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
1
TAT
 
2
ATT
0.67
ATC
2.1
 
 
ATA
2.7
5.47%
iMet/Met 
 
 
 
CAT
1/1
 
 
2
 
 
 
 
ATG
1.8
 
 
1.8%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
0.3
TAC
3.89
 
 
 
 
4.19%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.13
TAG
0.15
TAA
0.07
0.35%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.2
TGC
0.48
 
 
 
 
0.68%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.13
 
 
1.13%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
-