tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 58
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 1
Predicted pseudogenes 1
Total tRNAs 60
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 3050
Number of Codons: 987080

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
1
TGC
5
7
GCT
2.31
GCC
3.89
GCG
2.14
GCA
2.94
11.28%
GlyACC
 
GCC
1
CCC
1
TCC
1
3
GGT
2.11
GGC
3.23
GGG
1.74
GGA
0.9
7.98%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
1.17
CCC
1.37
CCG
1.58
CCA
1.18
5.3%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
0.57
ACC
1.83
ACG
1.49
ACA
1.82
5.71%
ValAAC
 
GAC
1
CAC
1
TAC
2
4
GTT
2.19
GTC
0.81
GTG
3.01
GTA
1.08
7.09%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
1.3
TCC
1.34
TCG
0.47
TCA
0.65
AGT
0.61
AGC
1.33
 
 
 
 
5.7%
ArgACG
2
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
 
TCT
1
4
CGT
1.82
CGC
2.54
CGG
1.32
CGA
0.32
 
 
 
 
AGG
0.31
AGA
0.3
6.61%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
5
CTT
1.96
CTC
0.84
CTG
4.58
CTA
0.48
 
 
 
 
TTG
1.67
TTA
0.61
10.14%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
2.41
TTC
1.22
 
 
 
 
3.63%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
1.39
AAC
1.64
 
 
 
 
3.03%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
1.6
AAA
2.01
3.61%
AspATC
 
GTC
1
 
 
 
 
1
GAT
3.76
GAC
1.49
 
 
 
 
5.25%
Glu 
 
 
 
CTC
 
TTC
3
3
 
 
 
 
GAG
1.36
GAA
3.92
5.28%
HisATG
 
GTG
1
 
 
 
 
1
CAT
1.59
CAC
0.89
 
 
 
 
2.48%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
2.84
CAA
1.07
3.91%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
5
CAT
1
TAT
 
6
ATT
2.88
ATC
1.59
 
 
ATA
0.59
5.06%
fMet/Met 
 
 
 
CAT
5/1
 
 
6
 
 
 
 
ATG
2.56
 
 
2.56%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
1.4
TAC
0.9
 
 
 
 
2.3%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.14
TAG
0.03
TAA
0.15
0.32%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.4
TGC
0.7
 
 
 
 
1.1%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.47
 
 
1.47%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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