Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.

Ala tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGTCATAGCTCAGTTGGTAGAGCGCTACAATGGCATTGTAGAG...........GtCAGCGGTTCGATCCCGCTTGGCTCCACCA tRNA-Ala-GGC-1-1 Sc: 71.8 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGACTTAGCTTAGTTGGTAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGGAGTTCGACTCTCCTAGTCTCCACCA tRNA-Ala-TGC-1-1 Sc: 83.6 GGGGACTTAGCTTAGTTGGTAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGGAGTTCGACTCTCCTAGTCTCCACCA tRNA-Ala-TGC-1-2 Sc: 83.6 GGGGACTTAGCTTAGTTGGTAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGGAGTTCGACTCTCCTAGTCTCCACCA tRNA-Ala-TGC-1-3 Sc: 83.6 GGGGACTTAGCTTAGTTGGTAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGGAGTTCGACTCTCCTAGTCTCCACCA tRNA-Ala-TGC-1-4 Sc: 83.6 GGGGACTTAGCTTAGTTGGTAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGGAGTTCGACTCTCCTAGTCTCCACCA tRNA-Ala-TGC-1-5 Sc: 83.6 GGGGACTTAGCTTAGTTGGTAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGGAGTTCGACTCTCCTAGTCTCCACCA tRNA-Ala-TGC-1-6 Sc: 83.6
Arg tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGCTCATAGCTCAGCTGGAtAGAGCACTTGGCTACGAACTAAGGG...........GtCGGGAGTTCGAATCTCTCTGAGCGCACCA tRNA-Arg-ACG-1-1 Sc: 81.6 GCGCTCATAGCTCAGCTGGAtAGAGCACTTGGCTACGAACTAAGGG...........GtCGGGAGTTCGAATCTCTCTGAGCGCACCA tRNA-Arg-ACG-1-2 Sc: 81.6 GCGCTCATAGCTCAGCTGGAtAGAGCACTTGGCTACGAACTAAGGG...........GtCGGGAGTTCGAATCTCTCTGAGCGCACCA tRNA-Arg-ACG-1-3 Sc: 81.6 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGCTCGTAGCTCAGTTGGAtAGAGTACAGGTTTCCGAAGCCTGGG...........GtCGTGGGTTCGATCCCCGCCGAGCGCACCA tRNA-Arg-CCG-1-1 Sc: 75.5 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGCCCTTAGCTTAACTGGAtAGAGCAGTTGCCTCCTAAGCGACCG...........A.CGTGGGTTCGAGTCCCGCAGGGCGCA... tRNA-Arg-CCT-1-1 Sc: 66.9 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGCCTGTAGCTCAGTTGGAtAGAGCATCCGCCTTCTAAGCGGATG...........GtCACAGGTTCGAATCCTGTCAGGCGCGCCA tRNA-Arg-TCT-1-1 Sc: 91.4
Asn tRNAs
>>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.... TCTCCCATAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCGCAG...........GtCCCTGGTTCGAGCCCAGGTGGGAGAGCCA tRNA-Asn-GTT-1-1 Sc: 71.2 >>>>>.>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<.<<<<<.... TCTCCAATAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCGCAG...........GtCCCTGGTTCGAGCCCAGGTGGGAGAGCCA tRNA-Asn-GTT-2-1 Sc: 64.5
Asp tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCAGCGGTAGTTCAGTTGGTtAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGCCCCGTCCGCTGCGCCA tRNA-Asp-GTC-1-1 Sc: 89.0 GCAGCGGTAGTTCAGTTGGTtAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGCCCCGTCCGCTGCGCCA tRNA-Asp-GTC-1-2 Sc: 89.0 GCAGCGGTAGTTCAGTTGGTtAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGCCCCGTCCGCTGCGCCA tRNA-Asp-GTC-1-3 Sc: 89.0
Cys tRNAs
>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>.>>>.......<<<.<<<<<<<<.... GGCGGGGTGGCAGAGTGGTC.ATGCAGCGGACTGCAACTCCGTGG...........ACGCCGGTTCGATTCCGACCTCCGCCTCCA tRNA-Cys-GCA-1-1 Sc: 64.9
Gln tRNAs
>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... AGGGGCGTCGCCAAGTGGTA.AGGCAGCGGGTTTTGATCCCGCCA...........TcCGTTGGTTCGAATCCAGCCGCCCCTGCCA tRNA-Gln-TTG-1-1 Sc: 71.8 AGGGGCGTCGCCAAGTGGTA.AGGCAGCGGGTTTTGATCCCGCCA...........TcCGTTGGTTCGAATCCAGCCGCCCCTGCCA tRNA-Gln-TTG-1-2 Sc: 71.8 AGGGGCGTCGCCAAGTGGTA.AGGCAGCGGGTTTTGATCCCGCCA...........TcCGTTGGTTCGAATCCAGCCGCCCCTGCCA tRNA-Gln-TTG-1-3 Sc: 71.8 AGGGGCGTCGCCAAGTGGTA.AGGCAGCGGGTTTTGATCCCGCCA...........TcCGTTGGTTCGAATCCAGCCGCCCCTGCCA tRNA-Gln-TTG-1-4 Sc: 71.8
Glu tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GTCCCTATCGTCTAGAGGCctA.GGACATCGCCCTTTCACGGCGGTA...........ACCGGGGTTCGAATCCCCGTAGGGACGCCA tRNA-Glu-TTC-1-1 Sc: 60.0 GTCCCTATCGTCTAGAGGCctA.GGACATCGCCCTTTCACGGCGGTA...........ACCGGGGTTCGAATCCCCGTAGGGACGCCA tRNA-Glu-TTC-1-2 Sc: 60.0 GTCCCTATCGTCTAGAGGCctA.GGACATCGCCCTTTCACGGCGGTA...........ACCGGGGTTCGAATCCCCGTAGGGACGCCA tRNA-Glu-TTC-1-3 Sc: 60.0 GTCCCTATCGTCTAGAGGCctA.GGACATCGCCCTTTCACGGCGGTA...........ACCGGGGTTCGAATCCCCGTAGGGACGCCA tRNA-Glu-TTC-1-4 Sc: 60.0
Gly tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGAATAGCTCAGTTGGTAGAGCATAACCTTGCCAAGGTTGGG...........GtCGCGAGTTCGAGTCTCGTTTCCCGCTCCA tRNA-Gly-GCC-1-1 Sc: 83.9 GCGGGAATAGCTCAGTTGGTAGAGCATAACCTTGCCAAGGTTGGG...........GtCGCGAGTTCGAGTCTCGTTTCCCGCTCCA tRNA-Gly-GCC-1-2 Sc: 83.9 GCGGGAATAGCTCAGTTGGTAGAGCATAACCTTGCCAAGGTTGGG...........GtCGCGAGTTCGAGTCTCGTTTCCCGCTCCA tRNA-Gly-GCC-1-3 Sc: 83.9 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGAGTAGCTCAGTTGGTAGAGCGGCAGCCTTCCAAGCTGCAT...........GtCGCGAGTTCGATCCTCGTCTCCCGCTCCA tRNA-Gly-TCC-1-1 Sc: 86.4
His tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GTGGATGTAGCTCAGTTGGTAGAGCCCTGGATTGTGATTCCAGTT...........GtCGCGGGTTCGAATCCCGTCATTCACCCCA tRNA-His-GTG-1-1 Sc: 76.0
Ile tRNAs
>>>>>>>..>>>>..................<<<<.>>>>>............<<<<<...........................>>>>>.......<<<<<.<<<<<<<.... GGGTCTGTAGCTCAGTTGGTt..A.......GAGCACACGCTTGATAA.....GCGTGGG......................GtCACAAGTTCAAGTCTTGT.CAGACCCACCA tRNA-Ile-GAT-1-1 Sc: 86.9 GGGTCTGTAGCTCAGTTGGTt..A.......GAGCACACGCTTGATAA.....GCGTGGG......................GtCACAAGTTCAAGTCTTGT.CAGACCCACCA tRNA-Ile-GAT-1-2 Sc: 86.9 GGGTCTGTAGCTCAGTTGGTt..A.......GAGCACACGCTTGATAA.....GCGTGGG......................GtCACAAGTTCAAGTCTTGT.CAGACCCACCA tRNA-Ile-GAT-1-3 Sc: 86.9 GGGTCTGTAGCTCAGTTGGTt..A.......GAGCACACGCTTGATAA.....GCGTGGG......................GtCACAAGTTCAAGTCTTGT.CAGACCCACCA tRNA-Ile-GAT-1-4 Sc: 86.9 GGGTCTGTAGCTCAGTTGGTt..A.......GAGCACACGCTTGATAA.....GCGTGGG......................GtCACAAGTTCAAGTCTTGT.CAGACCCACCA tRNA-Ile-GAT-1-5 Sc: 86.9 GGGTCTGTAGCTCAGTTGGTt..A.......GAGCACACGCTTGATAA.....GCGTGGG......................GtCACAAGTTCAAGTCTTGT.CAGACCCACCA tRNA-Ile-GAT-1-6 Sc: 86.9 >>>.......>>....................<<...>>.>............<.<<...>.>.>>>........<<<.<.<...>>>>>.......<<<<<.....<<<.... GGGTC...ACTT.....GGTgttA....aaaCAATAGACGATATCTAAgcatgTAGTATTCTCGAGCGTAGt...GCTGGCGGaCGCGGGTTCAACTCCCGC.CATCTCCACCA tRNA-Ile-GAT-2-1 Sc: 23.3
Leu tRNAs
>>>>.>>..>>>...........<<<.>>>>>.......<<<<<..>>>>...........<<<<..>>>>>.......<<<<<.<<.<<<<.... GCGGTGGTGGTGGAATTGGTaGACACGCTACCTTGAGGTGGTAGT.GCTTT.........CGGGCGTGGGGGTTCAAGTCCCCC.CTTCCGCACCA tRNA-Leu-GAG-1-1 Sc: 58.1 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.............<<<..>>>>>.......<<<<<.<<<<<<<.... GGGGGCGTGGCGAAATTGGTaGACGCACTGGATTTAGGTTCCAGC.GCC..GCAA.......GGTGTAAGAGTTCGAGTCTCTT.CGCCCCCACCA tRNA-Leu-TAG-1-1 Sc: 72.2 GGGGGCGTGGCGAAATTGGTaGACGCACTGGATTTAGGTTCCAGC.GCC..GCAA.......GGTGTAAGAGTTCGAGTCTCTT.CGCCCCCACCA tRNA-Leu-TAG-1-2 Sc: 72.2 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>...........<<<<..>>>>>.......<<<<<.<<<<<<<.... CCCGAGGTGGTGAAATTGGTaGACGCGGCGGACTCAAAATCCGCT.GTCA.GAGA......TGACGTGTCGGTTCGAGTCCGAC.CCTCGGGACCA tRNA-Leu-CAA-1-1 Sc: 70.0 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>...............<...>>>>>.......<<<<<.<<<<<<<.... GCCCGGGTGGTGAAATAGGTaGACACAGGGGATTTAAAATCCCCCGCCC..TCAA.......AGCGTGCCGGTTCGAGTCCGGC.CCCGGGCACCA tRNA-Leu-TAA-1-1 Sc: 65.9 GCCCGGGTGGTGAAATAGGTaGACACAGGGGATTTAAAATCCCCCGCCC..TCAA.......AGCGTGCCGGTTCGAGTCCGGC.CCCGGGCACCA tRNA-Leu-TAA-1-2 Sc: 65.9
Lys tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGTCGTTAGCTCAGTTGGTAGAGCAGCGGACTTTTAATCCGTTG...........GtCCCGCGTTCGAGTCGCGGACGACCCACCA tRNA-Lys-TTT-1-1 Sc: 86.2 GGGTCGTTAGCTCAGTTGGTAGAGCAGCGGACTTTTAATCCGTTG...........GtCCCGCGTTCGAGTCGCGGACGACCCACCA tRNA-Lys-TTT-1-2 Sc: 86.2
Met/Ile2 tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>.>>.......<<.<<<<<<<<<.... GGCTATGTAGCTCAGTT.GGTtAGAGCACCGCACTCATAATGCGGGG...........GtCACAAGTTCAAGTCTCGTCATAGCCACCA tRNA-Met-CAT-1-1 Sc: 82.3 GGCTATGTAGCTCAGTT.GGTtAGAGCACCGCACTCATAATGCGGGG...........GtCACAAGTTCAAGTCTCGTCATAGCCACCA tRNA-Met-CAT-1-2 Sc: 82.3 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TGCGGGGTGGAGCAGTCtGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTTGGTTCAAATCCGACCCCCGCATCCA tRNA-fMet-CAT-1-1 Sc: 75.0 .>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<..... TGCGGGATGGAGCAGTCtGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTTGGTTCAAATCCAGCTCCCGCTACCA tRNA-fMet-CAT-2-1 Sc: 69.9 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCTATAGCTCAGTC.GGTtAGAGCAGCGGACTCATAATCCGTTG...........GtCCACAGTTCGAGTCTGTGTGGGCCCACCA tRNA-Ile2-CAT-1-1 Sc: 83.2
Phe tRNAs
>>>>.>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<.<<<<.... GGCGTGATAGCTCAGTTGGTAGAGCAACGGATTGAAAATCCGTGT...........GtCCCCAGTTCGATCCTGGGTCTCGCCACCA tRNA-Phe-GAA-1-1 Sc: 75.3
Pro tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGAGCATAGCACAGCCtGGTAGTGCACCTGGTTTGGGACCAGGGG...........GtCGTAGGTTCGAATCCTACTGCTCCGACCA tRNA-Pro-TGG-1-1 Sc: 79.3 CGGAGCATAGCACAGCCtGGTAGTGCACCTGGTTTGGGACCAGGGG...........GtCGTAGGTTCGAATCCTACTGCTCCGACCA tRNA-Pro-TGG-1-2 Sc: 79.3
SeC tRNAs
Ser tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>.....<<<<<<..>>>>>.......<<<<<..<<<<<<<.... GGTGAGGTGTCCGAGTGGCtgA.AGGAGCACGCCTGGAAAGTGTGT.ATACGTTTAC.GCGTAT.CGAGGGTTCGAATCCCTC..TCTCACCGCCA tRNA-Ser-GGA-1-1 Sc: 73.8 >>>>>>>..>>>............<<<..>>>>.......<<<<...>>>>>>.....<<<<<<..>>>>>.......<<<<<..<<<<<<<.... GGAAGCGTGGCAGAGCGGTttA.ATGCACCGGTCTTGAAAACCGAC.GAGGGTGTGA.GTCCTC.CGTGAGTTCGAATCTCAC..CGCTTCCGCCA tRNA-Ser-TGA-1-1 Sc: 81.0 GGAAGCGTGGCAGAGCGGTttA.ATGCACCGGTCTTGAAAACCGAC.GAGGGTGTGA.GTCCTC.CGTGAGTTCGAATCTCAC..CGCTTCCGCCA tRNA-Ser-TGA-1-2 Sc: 81.0 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>.........<<<<..>>>>>.......<<<<<..<<<<<<<.... GGTGAGGTGGATGAGTGGCtgA.AATCACTTCCCTGCTAAGGAAGCATACCTATTA..CTGGTATCGAGGGTTCGAATCCCTC..TCTCACCGCCA tRNA-Ser-GCT-1-1 Sc: 76.3
Sup tRNAs
Thr tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCTCTTATAGCTCAGT.GGTA.GAGCACTCCCTTGGTAAGGGAGAG...........GtCTCGAGTTCAAATCTCGATAAGAGCTCCA tRNA-Thr-GGT-1-1 Sc: 77.8 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>.>.......<.<<<<<<<<<<.... GCCGGCATAGCTCAGTTGGTA.GAGCAACTGACTTGTAATCAGTAG...........GtCCACAGTTCGAATCCGTGTGCCGGCACCA tRNA-Thr-TGT-1-1 Sc: 83.5 GCCGGCATAGCTCAGTTGGTA.GAGCAACTGACTTGTAATCAGTAG...........GtCCACAGTTCGAATCCGTGTGCCGGCACCA tRNA-Thr-TGT-1-2 Sc: 83.5
Trp tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... AGGTCAGTAGTTCAATTGGTA.GAGCGTCGGTCTCCAAAACCGAAT...........GtTGGGGGTTCGAGTCCCTCCTGACCTGCCA tRNA-Trp-CCA-1-1 Sc: 79.3 AGAGGATTGGTGTAAT.GGTA.GCATGACGGTCTCCAAAACCGTTC...........G.TCAAGGTTCGAGTCCTTGATCCTCTGCCA tRNA-Trp-CCA-2-1 Sc: 66.8 AGAGGATTGGTGTAAT.GGTA.GCATGACGGTCTCCAAAACCGTTC...........G.TCAAGGTTCGAGTCCTTGATCCTCTGCCA tRNA-Trp-CCA-2-2 Sc: 66.8
Tyr tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>.........<<...>>>>>.......<<<<<.<<<<<<<.... GGTGAGATTCCCGAGCGGCcaA.AGGGGGCAGACTGTAACTCTGTTGCGAAA.....GCTtCGAAGGTTCGAATCCTTC.TCTCACCACCA tRNA-Tyr-GTA-1-1 Sc: 69.4
Val tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... AGGCGTATAGCTCAGTTGGTtAGAGCGCTACGTTGACATCGTAGAG...........GtCTCCAGTTCGAGTCTGGATATGCCTACCA tRNA-Val-GAC-1-1 Sc: 72.1 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCGCTTAGCTCAGTTGGT.AGAGCGTCTGCCTTACAAGCAGAAT...........GtCGGCGGTTCGATCCCGTCAGCGCCCACCA tRNA-Val-TAC-1-1 Sc: 86.1 GGGCGCTTAGCTCAGTTGGT.AGAGCGTCTGCCTTACAAGCAGAAT...........GtCGGCGGTTCGATCCCGTCAGCGCCCACCA tRNA-Val-TAC-1-2 Sc: 86.1 GGGCGCTTAGCTCAGTTGGT.AGAGCGTCTGCCTTACAAGCAGAAT...........GtCGGCGGTTCGATCCCGTCAGCGCCCACCA tRNA-Val-TAC-1-3 Sc: 86.1