Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.

Ala tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGCTGTGGCGCAGCTGGTAGCGCACCTGCATGGCATGCAGGGG...........GtCAGGGGTTCGAGTCCCCTCAGCTCCACCA tRNA-Ala-GGC-1-1 Sc: 83.2 GGGGCTGTGGCGCAGCTGGTAGCGCACCTGCATGGCATGCAGGGG...........GtCAGGGGTTCGAGTCCCCTCAGCTCCA... tRNA-Ala-GGC-2-1 Sc: 76.3 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGCTATAGCTCAGTTGGTAGAGCGCTTCGTTCGCATCGAAGAG...........GtCAGGAGTTCGAATCTCCTTAGCTCCA... tRNA-Ala-CGC-1-1 Sc: 76.8 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGGCATGGCGCAATTGGTAGCGCACCTGCTTTGCAAGCAGGGG...........GtTCGGGGTTCGAGTCCCCGTGCCTCCACCA tRNA-Ala-TGC-1-1 Sc: 85.6
Arg tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGCCCATAGCTCAGCTGGAtA.GAGCGTCTGTCTACGGAACAGAAG...........GtCAGGGGTTCGAATCCCTTTGGGCGCA... tRNA-Arg-ACG-1-1 Sc: 77.9 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCTCGTAGCTCAGG.GGAtA.GAGCGTCTGCCTCCGGAGCAGAAG...........GcCGTAGGTTCGAATCCTATCGAGGGCA... tRNA-Arg-CCG-1-1 Sc: 75.9 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCTCGTAGCTCAGT.GGAtA.GAGCACGGCTCTCCTAAAGCCGGT...........GtCGTTGGTTCGATTCCAATCGAGGGCA... tRNA-Arg-CCT-1-1 Sc: 71.8 >>>>>>>..>>>>..........<<<<.>>>>.........<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCCAGTAGCTCAGG.GGAtA.GAGCAGCGGCCTTCTAATCCGCCG...........GtCGGGGGTTCGATTCCCTCCTGGGGCA... tRNA-Arg-TCT-1-1 Sc: 70.3
Asn tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TCCTCCGTAGCTCAATTGGCAGAGCATTCGACTGTTAATCGAAGG...........GtTACTGGTTCAAGTCCAGTCGGAGGAG... tRNA-Asn-GTT-1-1 Sc: 70.9 TCCTCCGTAGCTCAATTGGCAGAGCATTCGACTGTTAATCGAAGG...........GtTACTGGTTCAAGTCCAGTCGGAGGAG... tRNA-Asn-GTT-1-2 Sc: 70.9
Asp tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGCCCTGTAGCGCAGTTGGTtAGCGCGCCGCCCTGTCACGGCGGAG...........GtCGCGGGTTCAAGTCCCGTCAGGGTCG... tRNA-Asp-GTC-1-1 Sc: 81.5
Cys tRNAs
>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GGTGGGTTGGCCGAGAGGCG.AGGCAGCGGCCTGCAAAGCCGTAT...........ACACGGGTTCGAATCCCGTACCCACCT... tRNA-Cys-GCA-1-1 Sc: 69.9 CGTGGTGTACCCGAGAGGCC.AGGGAGCTGCCTGCAAAGCAGCGC...........ACGCGGGTTCGAATCCCGCCACCACGT... tRNA-Cys-GCA-2-1 Sc: 61.4
Gln tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... TGGGATATGGTGTAATTGGCA.ACACTACGGTTTCTGGTACCGTC............AtTCTAGGTTCGAGTCCTGG.TATCCCAG... tRNA-Gln-CTG-1-1 Sc: 49.1 >>>>>>>..>>>>.........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<.<<<<<<<.... TCCGCTCTGGTGTAAT.GGCA.GCACCCCGGCCTTTGGAGCCGTGG...........AgTATAGGTTCGAATCCTAT.GGGCGGAA... tRNA-Gln-TTG-1-1 Sc: 55.2
Glu tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GGCCCCATCGTATAGCGGCctA.GTACGCCGCCCTCTCACGGCGGTA...........ACGCGGGTTCGAATCCCGCTGGGGTCA... tRNA-Glu-CTC-1-1 Sc: 65.7 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GCCCCCATCGTCTAGCGGCctA.GGACACCGCCCTTTCACGGCGGCG...........GCACGGGTTCGAATCCCGTTGGGGGTA... tRNA-Glu-TTC-1-1 Sc: 66.7
Gly tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGACGTAGCTCAGCTGGTA.GAGCACCACCTTGCCAAGGTGGAT...........GtCGCGAGTTCGAATCTCGTCGTCCGCTCCA tRNA-Gly-GCC-1-1 Sc: 89.9 GCGGACGTAGCTCAGCTGGTA.GAGCACCACCTTGCCAAGGTGGAT...........GtCGCGAGTTCGAATCTCGTCGTCCGCT... tRNA-Gly-GCC-2-1 Sc: 83.0 GCGGACGTAGCTCAGCTGGTA.GAGCACCACCTTGCCAAGGTGGAT...........GtCGCGAGTTCGAATCTCGTCGTCCGCT... tRNA-Gly-GCC-2-2 Sc: 83.0 >>>>>>>..>>>>.........<<<<.>.>>>.......<<<.<................>>>>>.......<<<<<<<<<<<<.... GCGGGCGTAGCTCAAT.GGTA.GAGCGCTAGCTTCCCAAGCTCGAT...........A.CGCGGGTTCGATTCCCGTCGCCCGCTCCA tRNA-Gly-CCC-1-1 Sc: 77.5 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGACGTAGCTTAAT.GGTA.AAGCCTCAGTCTTCCAAACTGATT...........A.CGCGGGTTCGATTCCCGTCGTCCCCTCCA tRNA-Gly-TCC-1-1 Sc: 81.5
His tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GTGGGCTTAGCTCAGTTGGCAGAGCGCCTGGTTGTGGTCCAGGAG...........GtCGCGGGTTCAACCCCCGTAGCTCACCCCA tRNA-His-GTG-1-1 Sc: 69.7
Ile tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCGTATAGCTCAGGCGGTtAGAGCGCTTCGCTGATAACGAAGAG...........GtCCCAGGTTCAAGTCCTGGTACGCCCA... tRNA-Ile-GAT-1-1 Sc: 75.9
Leu tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>...........<<<<...>>>>>.......<<<<<.<<<<<<<.... GCGCGGGTGGCGGAAT.GGCaG.ACGCGCTAGCTTGAGGTGCTAGT.CCTC.GAAA......GGGGG.TGGGGGTTCAAGTCCCCC.TCCGCGCA... tRNA-Leu-GAG-1-1 Sc: 61.7 GCGCGGGTGGCGGAAT.GGCaG.ACGCGCTAGCTTGAGGTGCTAGT.CCTC.GAAA......GGGGG.TGGGGGTTCAAGTCCCCC.TCCGCGCA... tRNA-Leu-GAG-1-2 Sc: 61.7 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>...........<<<<...>>>>>.......<<<<<.<<<<<<<.... GCGCGAGTGGCGGAAC.GGCaG.ACGCGCTGGCTTCAGGTGCCAGT.ATCC.GAAA......GGGTG.TGGGGGTTCAAATCCCCC.CTCGCGCA... tRNA-Leu-CAG-1-1 Sc: 67.6 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>...........<<<<...>>>>>.......<<<<<.<<<<<<<.... GCGCGAGTGGTGAAATTGGCaG.ACACGCAGGATTTAGGTTCCTGT.GCCTT.........CGGGCG.TGGGGGTTCAAGTCCCCC.CTTGCGCA... tRNA-Leu-TAG-1-1 Sc: 58.6 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>.............<<<...>>>>>.......<<<<<.<<<<<<<.... GCCCGAGTGGCGGAATTGGCaG.ACGCGCTGCACTCAAAATGCAGT.ATC..GAAA.......GGTG.TGTGGGTTCGAGTCCCAC.CTCGGGCA... tRNA-Leu-CAA-1-1 Sc: 73.0 >>>>>>>..>>>............<<<.>>>>>.......<<<<<........................>>>>>.......<<<<<.<<<<<<<.... GCCCCAGTAGCCCAATTGGCaG.AGGCAGCGGACTTAAAATCCGCGT...................GtTGTGGGTTCGAGTCCCAC.CTGGGGCA... tRNA-Leu-TAA-1-1 Sc: 74.4
Lys tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCACCTCTAGCTCAACTGGCAGAGCAATTGACTCTTAATCAATGG...........GtTCCGGGTTCGAGTCCCGGGGGGTGCACCA tRNA-Lys-CTT-1-1 Sc: 81.5 GCACCTCTAGCTCAACTGGCAGAGCAATTGACTCTTAATCAATGG...........GtTCCGGGTTCGAGTCCCGGGGGGTGCACCA tRNA-Lys-CTT-1-2 Sc: 81.5 >>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.... GGGCCTTTAGCTCAGTTGGTAGAGCATCGGACTTTTAATCCGTGG...........GtCGTGGGTTCGATCCCCACAGGGCCCA... tRNA-Lys-TTT-1-1 Sc: 80.9
Met/Ile2 tRNAs
.>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<..... CGCGGGGTGGAGCAGTTcGGT.AGCTCGCTGGGCTCATAACCCAGAG...........GtCACAGGTTCAAATCCTGTCCCCGCAA... tRNA-fMet-CAT-1-1 Sc: 76.1 CGCGGGGTGGAGCAGTTcGGT.AGCTCGCTGGGCTCATAACCCAGAG...........GtCACAGGTTCAAATCCTGTCCCCGCAA... tRNA-fMet-CAT-1-2 Sc: 76.1 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGCGGTGTAGCTCAGTT.GGTtAGAGCGCACGACTCATAATCGTGAG...........GtCGGGAGATCGAGCCTCCCCACCGCTA... tRNA-Met-CAT-1-1 Sc: 69.3 >>>>>>>..>>>>..........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.... GGGGCTATAGCTCAGCT.GGTtAGAGCGCGGGACTCATAATCCTAAG...........GtCCTCGGTTCAAGTCCGAGTAGCCCTA... tRNA-Ile2-CAT-1-1 Sc: 68.9
Phe tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGCTCTGTAGCTCAGTTGGTAGAGCGTTCGACTGAAAATCGAAAG...........GtCACCGGATCGACGCCGGTCGGAGCCACCA tRNA-Phe-GAA-1-1 Sc: 71.8
Pro tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGCTGTAGCGCAGCTtGGT.AGCGCACTTGACTGGGGGTCAAGGG...........GtCGCAGGTTCAAATCCTGTCAGCCCGACCA tRNA-Pro-GGG-1-1 Sc: 79.9 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGATGTAGCGCAGCTtGGT.AGCGCGCTTCGTTCGGGACGAAGAG...........GtCGCAGGTTCAAATCCTGTCATCCCGACCA tRNA-Pro-CGG-1-1 Sc: 82.0 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGGTGTAGCTCAGCTtGGCtAGAGCGCCTGCTTTGGGAGCAGGAA...........GtCGCAGGTTCAAATCCTGTCACCCCGA... tRNA-Pro-TGG-1-1 Sc: 77.9
SeC tRNAs
Ser tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>...............<<...>>>>>.......<<<<<..<<<<<<<.... GGAGAATTCGCCTAGCGGCctA.TGGCGCACGCCTGGAACGCGTGTTGGG....TTAAc....GCCCtCGGGGGTTCAAATCCCCC..ATTCTCCG... tRNA-Ser-GGA-1-1 Sc: 61.6 >>>>>>>...>>............<<..>>>>>.......<<<<<..>>>>>.........<<<<<...>>>>>.......<<<<<..<<<<<<<.... GGTGACGTGTCCGAGCGGCcgA.AGGTGCAACACTCGAAATGTTGT.TTGGTG.TAAA..AGCCAA..CGTGGGTTCAAATCCCAC..CGTCACCGCCA tRNA-Ser-CGA-1-1 Sc: 68.4 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>.......<<<<<<...>>>>>.......<<<<<..<<<<<<<.... GGAAGGTTGTCCGAGCGGCctA.AGGAGCTGGTCTTGAAAACCAGT.GTGCGG.TAAC.CCCGTAC..CAAGGGTTCAAATCCCTT..ACCTTCCG... tRNA-Ser-TGA-1-1 Sc: 69.6 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>.......<<<<<<...>>>>>.......<<<<<..<<<<<<<.... GGAGACGTGCCAGAGCGGCcgA.ATGGGCTTCACTGCTAATGAAGT.GTGGGGCACAA..CTCCAC..CGGGGGTTCAAATCCCCC..CGTCTCCG... tRNA-Ser-GCT-1-1 Sc: 72.9
Sup tRNAs
Thr tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCCCCTAGCTCAGT.GGT.A.GAGCGCGTTCTTGGTAAGAACGAG...........GtCACCGGATCGATTCCGGTGGGGGGCT... tRNA-Thr-GGT-1-1 Sc: 62.9 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCTTCCTTAGCTCAGTCGGT.A.GAGCGTTTCACTCGTAATGAAAAG...........GtCATCAGTTCGATTCTGATAGGAAGCT... tRNA-Thr-CGT-1-1 Sc: 71.8 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCTCCTTAGCTCAGTTGGCcA.GAGCACCGCTCTTGTAAAGCGGGG...........GtCGTCGGTTCGAATCCGACAGGGGGCTCCA tRNA-Thr-TGT-1-1 Sc: 86.2
Trp tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... AGGGTAGTGGCGCAATTGGTAGCGCAGCGGTCTCCAAAACCGCAG...........GtTGCAGGTTCGAGTCCTGTCTGCCCTG... tRNA-Trp-CCA-1-1 Sc: 77.1
Tyr tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>.............<...>>>>>.......<<<<<<<<<<<<.... GGCAGATTACCCGAGCGGCcaA.AGGGGGCTGACTGTAAATCAGCTGGCAA.......CGCCTaCGGGGGTTCGAATCCCTCATCTGCCA... tRNA-Tyr-GTA-1-1 Sc: 67.9
Val tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCGATTGGCGCAGC.GGTA.GCGCGCTTCCCTGACACGGAAGAG...........GtCACTGGTTCGATCCCAGTATCGCCCACCA tRNA-Val-GAC-1-1 Sc: 81.2 GGGCGATTGGCGCAGC.GGTA.GCGCGCTTCCCTGACACGGAAGAG...........GtCACTGGTTCGATCCCAGTATCGCCCACCA tRNA-Val-GAC-1-2 Sc: 81.2 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCGATTGGCGCAGT.GGTA.GCGCGCTTCGTTCACACCGAAGAG...........GtCACTGGTTCGAACCCAGTATCGCCCACCA tRNA-Val-CAC-1-1 Sc: 81.1 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGTCTTTAGCTCAGCTGGTA.GAGCGCCACGTTTACACCGTGGAT...........GtCATCGGTTCGATCCCGGTAGGACCCACCA tRNA-Val-TAC-1-1 Sc: 74.9