tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results (on host zam.soe.ucsc.edu)
Started: Fri Aug  4 08:43:16 PDT 2017

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Search Mode:                       Bacterial
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-bact.cm
                                   TRNAinf-bact-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         3
Seqs w/at least 1 hit:  2
Bases read:             5226648 (x2 for both strands)
Bases in tRNAs:         4713
tRNAs predicted:        60
Av. tRNA length:        78
Script CPU time:        0.65 s
Scan CPU time:          63.42 s
Scan speed:             164.8 Kbp/sec

First pass search(es) ended: Fri Aug  4 08:43:22 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     60
Infernal-confirmed tRNAs:     58
Bases scanned by Infernal:  5913
% seq scanned by Infernal:  0.1 %
Script CPU time:          0.36 s
Infernal CPU time:            38.03 s
Scan speed:               155.5 bp/sec

Infernal analysis of tRNAs ended: Fri Aug  4 08:44:02 PDT 2017

Overall scan speed: 102023.2 bp/sec