tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 54
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 3
Predicted pseudogenes 1
Total tRNAs 58
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 4587
Number of Codons: 1525008

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
2
CGC
1
TGC
1
4
GCT
1.67
GCC
5.81
GCG
2.89
GCA
2.07
12.44%
GlyACC
 
GCC
3
CCC
1
TCC
1
5
GGT
1.56
GGC
4.56
GGG
1.34
GGA
1.42
8.88%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
0.68
CCC
2
CCG
2.25
CCA
0.48
5.41%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
0.65
ACC
3.03
ACG
1.66
ACA
0.67
6.01%
ValAAC
 
GAC
2
CAC
1
TAC
1
4
GTT
1.4
GTC
3.07
GTG
3.28
GTA
0.62
8.37%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
0.3
TCC
2.2
TCG
1.18
TCA
0.58
AGT
0.37
AGC
1.52
 
 
 
 
6.15%
ArgACG
1
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
1
4
CGT
0.91
CGC
2.57
CGG
1.62
CGA
0.43
 
 
 
 
AGG
0.56
AGA
0.15
6.24%
LeuAAG
 
GAG
2
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
6
CTT
1.19
CTC
2.88
CTG
4.27
CTA
0.19
 
 
 
 
TTG
1.46
TTA
0.08
10.07%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
0.55
TTC
2.73
 
 
 
 
3.28%
AsnATT
 
GTT
2
 
 
 
 
2
AAT
0.47
AAC
2.15
 
 
 
 
2.62%
Lys 
 
 
 
CTT
2
TTT
1
3
 
 
 
 
AAG
2.26
AAA
0.72
2.98%
AspATC
 
GTC
1
 
 
 
 
1
GAT
1.53
GAC
4
 
 
 
 
5.53%
Glu 
 
 
 
CTC
1
TTC
1
2
 
 
 
 
GAG
2.99
GAA
2.63
5.62%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0.52
CAC
1.61
 
 
 
 
2.13%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
2.37
CAA
0.81
3.18%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
1
TAT
 
2
ATT
0.92
ATC
3.39
 
 
ATA
0.2
4.51%
fMet/Met 
 
 
 
CAT
2/1
 
 
3
 
 
 
 
ATG
1.97
 
 
1.97%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
0.4
TAC
1.68
 
 
 
 
2.08%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.12
TAG
0.1
TAA
0.07
0.29%
CysACA
 
GCA
2
 
 
 
 
2
TGT
0.1
TGC
0.54
 
 
 
 
0.64%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.49
 
 
1.49%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
-