tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 86
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 1
Total tRNAs 87
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 3950
Number of Codons: 1157707

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
 
TGC
4
5
GCT
1.46
GCC
2.25
GCG
2.81
GCA
1.61
8.13%
GlyACC
 
GCC
4
CCC
 
TCC
3
7
GGT
1.1
GGC
2.68
GGG
1.17
GGA
2.19
7.14%
ProAGG
 
GGG
 
CGG
 
TGG
3
3
CCT
0.81
CCC
0.49
CCG
2.25
CCA
0.25
3.8%
ThrAGT
 
GGT
1
CGT
 
TGT
4
5
ACT
0.6
ACC
1.05
ACG
2.11
ACA
1.64
5.4%
ValAAC
 
GAC
2
CAC
 
TAC
4
6
GTT
1.51
GTC
2.18
GTG
1.86
GTA
1.1
6.65%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
 
TGA
2
ACT
 
GCT
2
 
 
 
 
5
TCT
1
TCC
1.03
TCG
0.72
TCA
1.36
AGT
0.55
AGC
1.49
 
 
 
 
6.15%
ArgACG
4
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
2
8
CGT
0.69
CGC
1.02
CGG
1.02
CGA
0.26
 
 
 
 
AGG
0.4
AGA
1.02
4.41%
LeuAAG
 
GAG
1
CAG
1
TAG
2
 
 
 
 
CAA
1
TAA
3
8
CTT
2.19
CTC
1.38
CTG
2.91
CTA
0.19
 
 
 
 
TTG
1.29
TTA
1.67
9.63%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
3
 
 
 
 
3
TTT
2.86
TTC
1.63
 
 
 
 
4.49%
AsnATT
 
GTT
4
 
 
 
 
4
AAT
1.92
AAC
1.73
 
 
 
 
3.65%
Lys 
 
 
 
CTT
 
TTT
4
4
 
 
 
 
AAG
1.83
AAA
5.01
6.84%
AspATC
 
GTC
4
 
 
 
 
4
GAT
3
GAC
2.14
 
 
 
 
5.14%
Glu 
 
 
 
CTC
 
TTC
6
6
 
 
 
 
GAG
2.14
GAA
5.06
7.2%
HisATG
 
GTG
2
 
 
 
 
2
CAT
1.5
CAC
0.82
 
 
 
 
2.32%
Gln 
 
 
 
CTG
 
TTG
4
4
 
 
 
 
CAG
2.12
CAA
1.57
3.69%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
3
CAT
1
TAT
 
4
ATT
3.23
ATC
3.01
 
 
ATA
0.84
7.08%
fMet/Met 
 
 
 
CAT
3/2
 
 
5
 
 
 
 
ATG
2.7
 
 
2.7%
TyrATA
 
GTA
2
 
 
 
 
2
TAT
2
TAC
1.32
 
 
 
 
3.32%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.09
TAG
0.04
TAA
0.2
0.33%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.3
TGC
0.49
 
 
 
 
0.79%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
0.99
 
 
0.99%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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