tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 75
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 0
Total tRNAs 75
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 4190
Number of Codons: 1153102

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
 
TGC
2
3
GCT
1.54
GCC
2.16
GCG
2.66
GCA
1.67
8.03%
GlyACC
 
GCC
3
CCC
 
TCC
3
6
GGT
1.14
GGC
2.64
GGG
1.13
GGA
2.16
7.07%
ProAGG
 
GGG
 
CGG
 
TGG
2
2
CCT
0.84
CCC
0.46
CCG
2.16
CCA
0.28
3.74%
ThrAGT
 
GGT
1
CGT
 
TGT
3
4
ACT
0.67
ACC
1.04
ACG
2.01
ACA
1.71
5.43%
ValAAC
 
GAC
1
CAC
 
TAC
3
4
GTT
1.59
GTC
2.12
GTG
1.82
GTA
1.15
6.68%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
 
TGA
2
ACT
 
GCT
2
 
 
 
 
5
TCT
1
TCC
0.98
TCG
0.69
TCA
1.43
AGT
0.58
AGC
1.46
 
 
 
 
6.14%
ArgACG
3
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
2
7
CGT
0.69
CGC
0.97
CGG
0.96
CGA
0.27
 
 
 
 
AGG
0.4
AGA
1.04
4.33%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
2
6
CTT
2.22
CTC
1.35
CTG
2.79
CTA
0.23
 
 
 
 
TTG
1.28
TTA
1.69
9.56%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
3
 
 
 
 
3
TTT
2.86
TTC
1.61
 
 
 
 
4.47%
AsnATT
 
GTT
4
 
 
 
 
4
AAT
2.04
AAC
1.75
 
 
 
 
3.79%
Lys 
 
 
 
CTT
 
TTT
3
3
 
 
 
 
AAG
1.92
AAA
5.1
7.02%
AspATC
 
GTC
4
 
 
 
 
4
GAT
3.06
GAC
2.14
 
 
 
 
5.2%
Glu 
 
 
 
CTC
 
TTC
6
6
 
 
 
 
GAG
2.14
GAA
5.07
7.21%
HisATG
 
GTG
2
 
 
 
 
2
CAT
1.46
CAC
0.8
 
 
 
 
2.26%
Gln 
 
 
 
CTG
 
TTG
4
4
 
 
 
 
CAG
2.09
CAA
1.58
3.67%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
2
CAT
1
TAT
 
3
ATT
3.32
ATC
2.96
 
 
ATA
0.85
7.13%
fMet/Met 
 
 
 
CAT
3/2
 
 
5
 
 
 
 
ATG
2.67
 
 
2.67%
TyrATA
 
GTA
2
 
 
 
 
2
TAT
2
TAC
1.33
 
 
 
 
3.33%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.1
TAG
0.05
TAA
0.22
0.37%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.3
TGC
0.47
 
 
 
 
0.77%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
0.99
 
 
0.99%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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