Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.

Ala tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGCCATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAG...........GtCAGCGGTTCGATCCCGCTTGGCTCCACCA tRNA-Ala-GGC-1-1 Sc: 76.7 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGCTGTAGCTCAGCTGGGAGAGCGCGTCGTTCGCAATGACGAG...........GtCAGGGGTTCGATCCCCCTCAGCTCCACCA tRNA-Ala-CGC-1-1 Sc: 76.5 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<.... GGGGCCGTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGG...........GtCGTCGGTTCGATCCCGTCCGGCTCCACCA tRNA-Ala-TGC-1-1 Sc: 82.8 GGGGCCGTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGG...........GtCGTCGGTTCGATCCCGTCCGGCTCCACCA tRNA-Ala-TGC-1-2 Sc: 82.8 GGGGCCGTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGG...........GtCGTCGGTTCGATCCCGTCCGGCTCCACCA tRNA-Ala-TGC-1-3 Sc: 82.8
Arg tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCACCCGTAGCTCAGCTGGAtAGAGCACCAGACTACGAATCTGGGG...........GtCAGAGGTTCGAATCCTTTCGGGTGCGCCA tRNA-Arg-ACG-1-1 Sc: 88.6 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCACCCGTAGCTCAGCTGGAtAGAGCGCTGCCCTCCGAAGGCAGAG...........GcCACAGGTTCGAATCCTGTCGGGTGCGCCA tRNA-Arg-CCG-1-1 Sc: 91.4 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGTCCCGTAGCTCAGTAGGAtAGAGCGACAGATTCCTAATCTGTAG...........GtCACAGGTTCGATTCCTGTCGGGATCACCA tRNA-Arg-CCT-1-1 Sc: 80.6 >>>>>>>..>>>>.........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.... GGTCCCGTAGCTCAGTTGGAtAGAGCACCGGCCTTCTAAGCCGATG...........GtCGCAGGTTCGAATCCTGCCGGGATCGCCA tRNA-Arg-TCT-1-1 Sc: 87.5
Asn tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TCCCCGGTAGCTCAGCGGTA.GAGCAACCGGCTGTTAACCGGTTG...........GtCGCTGGTTCGAATCCGGCCCGGGGAGCCA tRNA-Asn-GTT-1-1 Sc: 83.3
Asp tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGTGTAGCTCAGTTGGTtAGAGTGCCGGCCTGTCACGCCGGAG...........GtCGCGGGTTCGAGCCCCGTCACTCGCGCCA tRNA-Asp-GTC-1-1 Sc: 85.0 GCGGGTGTAGCTCAGTTGGTtAGAGTGCCGGCCTGTCACGCCGGAG...........GtCGCGGGTTCGAGCCCCGTCACTCGCGCCA tRNA-Asp-GTC-1-2 Sc: 85.0
Cys tRNAs
>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GGCCTCGTGGCGGAGTGGTT.ACGCAGAGGACTGCAAATCCTTGC...........ACCCCGGTTCGATTCCGGGCGAGGCCTCCA tRNA-Cys-GCA-1-1 Sc: 69.2
Gln tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TGGGGGATAGTTTAAGGGTA.GAACAGCGGACTCTGACTCCGTTA...........G.TCTTGGTTCGAATCCAGGTCCCCCAGCCA tRNA-Gln-CTG-1-1 Sc: 66.7 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TGGGGCGTAGCCAAGCGGTA.AGGCAGCGGTTTTTGGTACCGCCA...........TtCCCTGGTTCGAATCCAGGCGCCCCAGCCA tRNA-Gln-TTG-1-1 Sc: 70.7
Glu tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GCGCCCATCGTCTAGCGGTcA.GGACGGCGCCCTCTCACGGCGCAA...........ACAGGGGTTCGATTCCCCTTGGGCGTACCA tRNA-Glu-CTC-1-1 Sc: 68.9 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GCGCCCATCGTCTAGCGGTtA.GGACGCCGCCCTTTCACGGCGGAA...........ACAGGGGTTCGATTCCCCTTGGGCGTACCA tRNA-Glu-TTC-1-1 Sc: 71.8 GCGCCCATCGTCTAGCGGTtA.GGACGCCGCCCTTTCACGGCGGAA...........ACAGGGGTTCGATTCCCCTTGGGCGTACCA tRNA-Glu-TTC-1-2 Sc: 71.8
Gly tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGTGTAGCTCAGGGGTA.GAGCACAACCTTGCCAAGGTTGGG...........GtCGAGGGTTCGAATCCCTTCGCCCGCTCCA tRNA-Gly-GCC-1-1 Sc: 85.0 GCGGGTGTAGCTCAGGGGTA.GAGCACAACCTTGCCAAGGTTGGG...........GtCGAGGGTTCGAATCCCTTCGCCCGCTCCA tRNA-Gly-GCC-1-2 Sc: 85.0 >>>>>>>..>.>>........<<.<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGTATGATGTAATGGTA.GCCTGTCAGCTTCCCAAGCTGAAC...........G.CGCGGGTTCGATTCCCGCTACCCGCTCCA tRNA-Gly-CCC-1-1 Sc: 69.8 >>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.... GCGGGTATAGCTCAATGGTA.GAGCAGCAGCCTTCCAAGCTGAAT...........A.CGCGGGTTCGATTCCCGCTACCCGCTCCA tRNA-Gly-TCC-1-1 Sc: 83.6
His tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGTCGTAGCTCAGTTGGTtAGAGCGCAGGATTGTGGCTCCTGAG...........GtCGTTGGTTCAACTCCAACCGACCGTACCA tRNA-His-GTG-1-1 Sc: 78.8
Ile tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCTTGTAGCTCAGTTGGTtAGAGCACACGCTTGATAAGCGTGGG...........GtCGGAGGTTCAAGTCCTCCCAGGCCCACCA tRNA-Ile-GAT-1-1 Sc: 86.3 GGGCTTGTAGCTCAGTTGGTtAGAGCACACGCTTGATAAGCGTGGG...........GtCGGAGGTTCAAGTCCTCCCAGGCCCACCA tRNA-Ile-GAT-1-2 Sc: 86.3 GGGCTTGTAGCTCAGTTGGTtAGAGCACACGCTTGATAAGCGTGGG...........GtCGGAGGTTCAAGTCCTCCCAGGCCCACCA tRNA-Ile-GAT-1-3 Sc: 86.3
Leu tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>............<<<..>>>>>.......<<<<<.<<<<<<<.... GCGGTCGTGGCGGAATTGGTaGACGCGCAGCGTTGAGGTCGCTGTGGG.GCAA.......CCCGTGGAAGTTCGAGTCTTCT.CGACCGCACCA tRNA-Leu-GAG-1-1 Sc: 70.9 GCGGTCGTGGCGGAATTGGTaGACGCGCAGCGTTGAGGTCGCTGTGGG.GCAA.......CCCGTGGAAGTTCGAGTCTTCT.CGACCGCACCA tRNA-Leu-GAG-1-2 Sc: 70.9 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>..........<<<<..>>>>>.......<<<<<.<<<<<<<.... GCCCAGATGGCGGAATTGGTaGACGCACCAGCTTCAGGTGCTGGCGCTCGCAA......GGGCGTGGAGGTTCGAGTCCTCT.TCTGGGCACCA tRNA-Leu-CAG-1-1 Sc: 74.5 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>..............<<..>>>>>.......<<<<<.<<<<<<<.... GCGGATGTGGCGAAATTGGTaGACGCACCAGATTTAGGTTCTGGCGGGA..........GACCGTGGGGGTTCGAGTCCCTC.CATCCGCACCA tRNA-Leu-TAG-1-1 Sc: 70.1 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>............<<<..>>>>>.......<<<<<.<<<<<<<.... GCGGGTGTGGTGGAACTGGTaGACGCGCCGGACTCAAAATCCGGTTCC.GAAA.......GGAGTGTCGGTTCGATTCCGAC.CACCCGCACCA tRNA-Leu-CAA-1-1 Sc: 76.4 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>..........<<<<..>>>>>.......<<<<<.<<<<<<<.... GCGGTCGTGGCGAAATTGGTaTACGCAACGGACTTAAAATCCGTCGTCTTTA.......AGACTTGCGGGTTCAAGTCCCGC.CGACCGCACCA tRNA-Leu-TAA-1-1 Sc: 77.8
Lys tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGTGATTAGCTCAGTTGGTAGAGCAGCTGACTCTTAATCAGCGG...........GtCGTAGGTTCGATCCCTACATCACCCACCA tRNA-Lys-CTT-1-1 Sc: 88.8 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GAGCGCGTAGCTCAGCCGGTAGAGCAACTGACTTTTAATCAGTAG...........GtCCAGGGTTCGAATCCCTGCGCGCTCACCA tRNA-Lys-TTT-1-1 Sc: 89.0
Met/Ile2 tRNAs
.>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<..... CGCGGGGTGGAGCAGCCcGGT.AGCTCGTCAGGCTCATAACCTGAAG...........GcCGCAGGTTCAAATCCTGCCCCCGCAACCA tRNA-fMet-CAT-1-1 Sc: 80.8 CGCGGGGTGGAGCAGCCcGGT.AGCTCGTCAGGCTCATAACCTGAAG...........GcCGCAGGTTCAAATCCTGCCCCCGCAACCA tRNA-fMet-CAT-1-2 Sc: 80.8 CGCGGGGTGGAGCAGCCcGGT.AGCTCGTCAGGCTCATAACCTGAAG...........GcCGCAGGTTCAAATCCTGCCCCCGCAACCA tRNA-fMet-CAT-1-3 Sc: 80.8 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGCGGAGTAGCTCAGTA.GGTtAGAGCAGAGGAATCATAATCCTTGT...........GtCGGGGGTTCGAATCCCTCCTCCGCTACCA tRNA-Met-CAT-1-1 Sc: 77.2 GGGCCTGTAGCTCAATT.GGTtAGAGCCGGCGGCTCATAACCGCTTG...........GtTGGGGGTTCGAGTCCCTCCGGGCCCACCA tRNA-Ile2-CAT-1-1 Sc: 82.7
Phe tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCGGATAGCTCAGTTGGTAGAGCAGCGGATTGAAAATCCGCGT...........GtCGGTGGTTCGAATCCGCCTCCGGGCACCA tRNA-Phe-GAA-1-1 Sc: 84.5
Pro tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGAGCGTAGCGCAGCCcGGTAGCGCACTTGACTGGGGGTCAAGGG...........GtCGTGGGTTCGAATCCCGCCGCTCCGACCA tRNA-Pro-GGG-1-1 Sc: 76.6 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGAGTGTAGCGCAGCCtGGTAGCGCACCTCGTTCGGGACGAGGGG...........GtCGGAGGTTCGAATCCTCTCACTCCGACCA tRNA-Pro-CGG-1-1 Sc: 79.6 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGAGCGTAGCGCAGTCtGGTAGCGCACCTGATTTGGGATCAGGGG...........GtCGCAGGTTCGAATCCTGCCGCTCCGACCA tRNA-Pro-TGG-1-1 Sc: 86.5
SeC tRNAs
Ser tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>......<<<<<<..>>>>>.......<<<<<..<<<<<<<.... GGAGAGGTGGCCGAGTGGTtgA.AGGCGCACGCCTGGAACGCGTGT.ATACGGGAAA..CCGTAT.CGAGGGTTCGAATCCCTC..TCTCTCCGCCA tRNA-Ser-GGA-1-1 Sc: 90.3 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>......<<<<<<..>>>>>.......<<<<<..<<<<<<<.... GGAGAGGTGGCTGAGTGGTtgA.AAGCACCGCACTCGAAATGCGGC.ATGGGGGCAA..CTCCAT.CGGGGGTTCGAATCCCTC..CCTCTCCGCCA tRNA-Ser-CGA-1-1 Sc: 96.5 >>>.>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>......<<<<<<..>>>>>.......<<<<<..<<<.<<<.... GGAAGGGTGGCCGAGCGGTttA.AGGCACCGGTCTTGAAAACCGGC.GTGCGAGAGA..TCGTAC.CGTGGGTTCGAATCCCAC..CCCCTCCGCCA tRNA-Ser-TGA-1-1 Sc: 85.7 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>........<<<<<..>>>>>.......<<<<<..<<<<<<<.... GGAGAGGTGGCCGAGTGGTcgA.AGGCGCTCCCCTGCTAAGGGAGTAGACCT.CAAAa..GGGTCTCGTGGGTTCGAATCCCAT..CCTCTCCGCCA tRNA-Ser-GCT-1-1 Sc: 85.9
Sup tRNAs
Thr tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCTGCGGTAGCTCAGT.GGTA.GAGCACTCCCTTGGTAAGGGAGAG...........GtCGAGAGTTCAATCCTCTCTCGCAGCACCA tRNA-Thr-GGT-1-1 Sc: 81.7 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCGCTTTAGCTCAGTTGGTA.GAGCACATCATTCGTAATGATGGG...........GtCGCGTGTTCGAGTCACGCAAGCGGCACCA tRNA-Thr-CGT-1-1 Sc: 86.1 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCTTATAGCTCAGTTGGTA.GAGCACCTGATTTGTAATCAGGGG...........GtCGGGAGTTCGAGTCTCTCTGGGGGCACCA tRNA-Thr-TGT-1-1 Sc: 85.6
Trp tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... AGGGGTATAGCTCAGTTGGTAGAGCGACGGTCTCCAAAACCGTAG...........GtCGCGGGTTCGAACCCTGCTGCCCCTGCCA tRNA-Trp-CCA-1-1 Sc: 87.3
Tyr tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>.>>.......<<.<...>>>>>.......<<<<<<<<<<<<.... GGAGGGATGCCCGAGTGGTtaA.AGGGGACGGACTGTAAATCCGTTGGCTA.......TGCCTaCGTTGGTTCAAATCCAACTCCCTCCACCA tRNA-Tyr-GTA-1-1 Sc: 77.4
Val tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCGTGTAGCTCAGC.GGGA.GAGCACTACGTTGACATCGTAGGG...........GtCACAGGTTCAATCCCTGTCACGCCCACCA tRNA-Val-GAC-1-1 Sc: 77.6 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCGCGTAGCTCAGC.GGGA.GAGCACTCCCTTCACACGGGAGGG...........GtCACAGGTTCAATCCCTGTCGCGCCCACCA tRNA-Val-CAC-1-1 Sc: 80.0 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCGATTAGCTCAGTTGGTA.GAGCGCTTCGTTTACACCGAAGAT...........GtCGGGAGTTCGAGTCTCTCATCGCCCACCA tRNA-Val-TAC-1-1 Sc: 83.8