tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 57
Selenocysteine tRNAs (TCA) 1
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 1
Total tRNAs 59
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 4822
Number of Codons: 1561038

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
1
TGC
4
6
GCT
0.3
GCC
3.53
GCG
10.06
GCA
0.69
14.58%
GlyACC
 
GCC
2
CCC
1
TCC
1
4
GGT
0.34
GGC
6.59
GGG
1.05
GGA
0.24
8.22%
ProAGG
 
GGG
1
CGG
1
TGG
2
4
CCT
0.13
CCC
1.27
CCG
3.8
CCA
0.09
5.29%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
0.07
ACC
1.31
ACG
3.42
ACA
0.12
4.92%
ValAAC
 
GAC
1
CAC
1
TAC
1
3
GTT
0.23
GTC
3.51
GTG
3.65
GTA
0.16
7.55%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
0
TCC
0.59
TCG
2.63
TCA
0.09
AGT
0.09
AGC
1.59
 
 
 
 
4.99%
ArgACG
2
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
1
5
CGT
0.49
CGC
5.31
CGG
1.68
CGA
0.28
 
 
 
 
AGG
0.16
AGA
0.04
7.96%
LeuAAG
 
GAG
2
CAG
2
TAG
1
 
 
 
 
CAA
1
TAA
 
6
CTT
0.3
CTC
4.46
CTG
4.56
CTA
0.07
 
 
 
 
TTG
0.6
TTA
0.02
10.01%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
0.38
TTC
3.22
 
 
 
 
3.6%
AsnATT
 
GTT
2
 
 
 
 
2
AAT
0.47
AAC
2.01
 
 
 
 
2.48%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
2.51
AAA
0.35
2.86%
AspATC
 
GTC
2
 
 
 
 
2
GAT
1.62
GAC
4.01
 
 
 
 
5.63%
Glu 
 
 
 
CTC
 
TTC
1
1
 
 
 
 
GAG
3.2
GAA
1.66
4.86%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0.77
CAC
1.58
 
 
 
 
2.35%
Gln 
 
 
 
CTG
 
TTG
1
1
 
 
 
 
CAG
2.62
CAA
0.57
3.19%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
4
CAT
1
TAT
 
5
ATT
0.41
ATC
3.81
 
 
ATA
0.04
4.26%
fMet/Met 
 
 
 
CAT
2/1
 
 
3
 
 
 
 
ATG
2.08
 
 
2.08%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
0.7
TAC
1.67
 
 
 
 
2.37%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.22
TAG
0.03
TAA
0.05
0.3%
CysACA
 
GCA
2
 
 
 
 
2
TGT
0
TGC
0.93
 
 
 
 
0.93%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.33
 
 
1.33%
SelCys 
 
 
 
 
 
TCA
1
1
 
 
 
 
 
 
 
 
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