Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.

Ala tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGGTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAG...........GtCAGCGGTTCGATCCCGCTTACCTCCACCA tRNA-Ala-GGC-1-1 Sc: 74.7 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGCGGTAGCTCAGCTGGGAGAGCGTCGCGTTCGCAATGCGAAG...........GtCGGGAGTTCGATCCTCCTCCGCTCCACCA tRNA-Ala-CGC-1-1 Sc: 78.0 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<.... GGGGGCATAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGG...........GtCGTCGGTTCGATCCCGTCTGCCTCCACCA tRNA-Ala-TGC-1-1 Sc: 80.7 GGGGGCATAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGG...........GtCGTCGGTTCGATCCCGTCTGCCTCCACCA tRNA-Ala-TGC-1-2 Sc: 80.7 GGGGGCATAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGG...........GtCGTCGGTTCGATCCCGTCTGCCTCCACCA tRNA-Ala-TGC-1-3 Sc: 80.7 >>.>>>>..>>>>........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<.<<.... GG.GGCATAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGG...........GtCGTCGGTTCGATCCCGTCTGCCTCCACCA tRNA-Ala-TGC-2-1 Sc: 72.7
Arg tRNAs
>>>>>>>..>>>>................<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... GCGGCTGTAGCTCAGTTGGAtA.......GAGTACTTGGCTACGAACCAAGGG...........GtCGTGGGTTCGAATCCTGC.CAGCCGCGCCA tRNA-Arg-ACG-1-1 Sc: 85.7 GCGGCTGTAGCTCAGTTGGAtA.......GAGTACTTGGCTACGAACCAAGGG...........GtCGTGGGTTCGAATCCTGC.CAGCCGCGCCA tRNA-Arg-ACG-1-2 Sc: 85.7 >>>>>>>..>>>>................<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... GCGCCCGTAGCTCAAT.GGAtA.......GAGTACTGCCCTCCGAAGGCAGGG...........GtTGCTGGTTCGATCCCAGC.CGGGCGCGCCA tRNA-Arg-CCG-1-1 Sc: 79.9 >>>>>>>..>>>>................<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... CTCCCCGTAGTTCAAT.GGAtA.......GAACAAGCGCCTCCTAAGCGCTAG...........A.TACAGGTTCGATTCCTGT.CGGGGGGACCA tRNA-Arg-CCT-1-1 Sc: 69.7 >>>>>>>..>>>>................<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... CCGCCCTTAGCTCAGTCGGAtA.......GAGCAACGGCCTTCTAAGCCGTAG...........GtCACACGTTCGAATCGTGT.AGGGCGGGCCA tRNA-Arg-TCT-1-1 Sc: 79.6 >>>>>>...>>....................<<.>>>>>.......<<<<<................>>>>>.......<<<<<..<<<<<<.... CCGCCC..AGC..........A.........GCAACGGCCTTCTAAGCCGTAG...........GtCACACGTTCGAATCGTGT.AGGGCGGGCCA tRNA-Arg-TCT-2-1 Sc: 39.2
Asn tRNAs
>>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.... TCCCCGATAGCTCAGTCGGTAGAGCGCCGGACTGTTAATCCGTAG...........GtCCCTGGTTCGAGCCCAGGTCGGGGAGCCA tRNA-Asn-GTT-1-1 Sc: 75.5 TCCCCGATAGCTCAGTCGGTAGAGCGCCGGACTGTTAATCCGTAG...........GtCCCTGGTTCGAGCCCAGGTCGGGGAGCCA tRNA-Asn-GTT-1-2 Sc: 75.5
Asp tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGAGCGGTAGTTCAGTCGGTtAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGTCCCGTCCGCTCCGCCA tRNA-Asp-GTC-1-1 Sc: 91.2 GGAGCGGTAGTTCAGTCGGTtAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGTCCCGTCCGCTCCGCCA tRNA-Asp-GTC-1-2 Sc: 91.2 GGAGCGGTAGTTCAGTCGGTtAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGTCCCGTCCGCTCCGCCA tRNA-Asp-GTC-1-3 Sc: 91.2
Cys tRNAs
>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GGCGCGATAGCAAAGCGGTT.ATGCAGCGGCCTGCAAAGCCGTGT...........AGGCCGGTTCGACTCCGGCTCGCGCCTCCA tRNA-Cys-GCA-1-1 Sc: 73.7 GGCGCGGTAGCAAAGCGGTT.ATGCGGCGGCCTGCAAAGCCGCTC...........AGGTCGGTTCGACTCCGGCTCGCGCCTCCA tRNA-Cys-GCA-2-1 Sc: 67.2
Gln tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... AGGGGAGTCGCCAAGTTGGTtAAGGCACCGGATTTTGATTCCGGCA...........TgCGAGGGTTCGAGTCCTTCCTCCCCTGCCA tRNA-Gln-TTG-1-1 Sc: 76.9
Glu tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GTCCCCTTCGTCTAGAGGCctA.GGACATCACCCTTTCACGGTGAGT...........ACAGGGGTTCGAATCCCCTAGGGGACGCCA tRNA-Glu-TTC-1-1 Sc: 62.6 GTCCCCTTCGTCTAGAGGCctA.GGACATCACCCTTTCACGGTGAGT...........ACAGGGGTTCGAATCCCCTAGGGGACGCCA tRNA-Glu-TTC-1-2 Sc: 62.6
Gly tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGAGTAGCTCAGTTGGT.A.GAGCGCAACCTTGCCAAGGTTGAG...........GtCGCGAGTTCGAGACTCGTCTCCCGCTCCA tRNA-Gly-GCC-1-1 Sc: 84.9 GCGGGAGTAGCTCAGTTGGT.A.GAGCGCAACCTTGCCAAGGTTGAG...........GtCGCGAGTTCGAGACTCGTCTCCCGCTCCA tRNA-Gly-GCC-1-2 Sc: 84.9 >>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGCGTCGTATAAT.GGCcA.TTACCTCAGCTTCCCAAGCTGATG...........A.CGTGGGTTCGATTCCCATCGCCCGCTCCA tRNA-Gly-CCC-1-1 Sc: 70.0 >>>>>>>..>>>>..........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.... GCGGGTGTAGCTCAAT.GGT.A.GAGCAGAAGCCTTCCAAGCTTACG...........A.CGAGGGTTCGATTCCCTTCACCCGCTCCA tRNA-Gly-TCC-1-1 Sc: 80.8
His tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GTGGCTGTAGCTCAGTTGGTAGAGTCCAGGATTGTGATTCCTGTT...........GtCGTGGGTTCGAGTCCCATCAGCCACCCCA tRNA-His-GTG-1-1 Sc: 74.4
Ile tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGTCTGTAGCTCAGTCGGTtA.GAGCACCGTCTTGATAAGGCGGGG...........GtCGTTGGTTCGAATCCAACCAGACCCACCA tRNA-Ile-GAT-1-1 Sc: 86.3 GGGTCTGTAGCTCAGTCGGTtA.GAGCACCGTCTTGATAAGGCGGGG...........GtCGTTGGTTCGAATCCAACCAGACCCACCA tRNA-Ile-GAT-1-2 Sc: 86.3 GGGTCTGTAGCTCAGTCGGTtA.GAGCACCGTCTTGATAAGGCGGGG...........GtCGTTGGTTCGAATCCAACCAGACCCACCA tRNA-Ile-GAT-1-3 Sc: 86.3 GGGTCTGTAGCTCAGTCGGTtA.GAGCACCGTCTTGATAAGGCGGGG...........GtCGTTGGTTCGAATCCAACCAGACCCACCA tRNA-Ile-GAT-1-4 Sc: 86.3
Leu tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.........<<<...>>>>>.......<<<<<.<<<<<<<.... GCCGACGTGGTGAAATTGGTaGACACGCTATCTTGAGGGGGTAGT.GGC.GAAA....GCCG.TGCGAGTTCGAGTCTCGC.CGTCGGCACCA tRNA-Leu-GAG-1-1 Sc: 67.3 GCCGACGTGGTGAAATTGGTaGACACGCTATCTTGAGGGGGTAGT.GGC.GAAA....GCTG.TGCGAGTTCGAGTCTCGC.CGTCGGCACCA tRNA-Leu-GAG-2-1 Sc: 64.9 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>.......<<<<...>>>>>.......<<<<<.<<<<<<<.... GCCCAGGTGGCGGAATTGGTaGACGCACTAGGTTCAGGTCCTAGC.GGTGGCAA...CACCG.TGGAGGTTCGAGTCCTCT.CCTGGGCACCA tRNA-Leu-CAG-1-1 Sc: 74.9 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.........<<<...>>>>>.......<<<<<.<<<<<<<.... GCCCAGGTGGCGAAATTGGTaGACGCACTAGGTTCAGGTCCTAGCGGTG.GCAA....CACTgTGGAGGTTCGAGTCCTCT.CTTGGGCACCA tRNA-Leu-CAG-2-1 Sc: 70.4 >>>>>>>..>>>...........<<<..>>>>.......<<<<...>>>>.......<<<<...>>>>>.......<<<<<.<<<<<<<.... GCGTGAGTGGCGAAATTGGTaGACGCACCAGGTTTAGGTCCTGAC.GCCCGCAA...GGGCG.TGCCGGTTCGAGTCCGGC.CTCACGCACCA tRNA-Leu-TAG-1-1 Sc: 74.4
Lys tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGCGTTAGCTCAGTTGGTAGAGCAGCGGACTCTTAATCCGTAG...........GtCGAGTGTTCGAGTCACTCACGCCCCACCA tRNA-Lys-CTT-1-1 Sc: 90.4 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGTCGTTAGCTCAGCTGGTAGAGCAGCGGACTTTTAATCCGTTG...........GtCACTGGTTCGAATCCAGTACGGCCTACCA tRNA-Lys-TTT-1-1 Sc: 84.5
Met/Ile2 tRNAs
.>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<..... CGCGGGGTGGAGCAGTCtGGC.A.GCTCGTCGGGCTCATAACCCGAAG...........GtCGTAGGTTCAAATCCTACCCCCGCAACCA tRNA-fMet-CAT-1-1 Sc: 80.2 CGCGGGGTGGAGCAGTCtGGC.A.GCTCGTCGGGCTCATAACCCGAAG...........GtCGTAGGTTCAAATCCTACCCCCGCAACCA tRNA-fMet-CAT-1-2 Sc: 80.2 >>>>>>>..>>>>...........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.... GGCGAATTAGCTCAGTC.GGTtA.GAGCGACGGAATCATAATCCGCAG...........GtCCGGGGTTCGAGTCCCTGATTCGCCACCA tRNA-Met-CAT-1-1 Sc: 77.7 >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCTGTAGCTCAGG..GGTtA.GAGCAGTCGACTCATAATCGATTG...........GtCGCGGGTTCGAAACCCGCCGGGCCCACCA tRNA-Ile2-CAT-1-1 Sc: 83.7
Phe tRNAs
>>>>.>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<.<<<<.... GGCCCGGTAGCTCAGTTGGTAGAGCAGCGGATTGAAAATCCGCGT...........GtCGGTGGTTCGATTCCGCCCCAGGCCACCA tRNA-Phe-GAA-1-1 Sc: 75.3
Pro tRNAs
>>>>>>>..>>>>................<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... CGGGGCGTAGCGCAGCCtGGT.A......GCGTACCTGCATGGGGTGCAGGTG...........GtCGGAGGTTCAAATCCTCT.CGCCCCGACCA tRNA-Pro-GGG-1-1 Sc: 72.2 >>>>>>>..>>>>................<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... CGGGGTGTAGCTTAGCCtGGT.A......GAGCGCTACGTTCGGGACGTAGAG...........GcCGGAGGTTCGAATCCTCT.CACCCCGACCA tRNA-Pro-CGG-1-1 Sc: 78.5 >>>>>>>..>>>>................<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... CGGAGCGTAGCGCAGCCtGGT.A......GCGCATCTGATTTGGGATCAGAGG...........GtCGTAGGTTCGAATCCTAT.CGCTCCGACCA tRNA-Pro-TGG-1-1 Sc: 81.1 >>>......>>>>................<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.....<<<.... GCA.....GGCTT.......CaA......AAGTACCAGTTTTGGGGGCTGGGG...........AaTGCGGGTTCGAATCCCGT.CAGGTGCGCCA tRNA-Pro-TGG-2-1 Sc: 32.4
SeC tRNAs
>>.>>>>>..>>>..........<<<..>>>>>.......<<<<<..>>>>>>>.....<<<<<<<..>>>>>.......<<<<<<<<<<.<<.... GGaAGGCATTCGTATCCGGTggTGCG.GCTGGGCTTCAAACCCAGTTGGTGCGGTCAGcCCGCGCCAGGTCGGTTCGACTCCGGCTGCCTtCCGCCA tRNA-SeC-TCA-1-1 Sc: 130.3
Ser tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>......<<<<<<...>>>>>.......<<<<<..<<<<<<<.... GGAGAGATGGATGAGTGGTttA.AGTCGCACGCCTGGAAAGCGTGT.ATAGGTGAAA..GCCTAT..CGGGGGTTCGAATCCCCC..TCTCTCCGCCA tRNA-Ser-GGA-1-1 Sc: 85.3 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>......<<<<<<...>>>>>.......<<<<<..<<<<<<<.... GGAAAGGTGGCAGAGAGGTcgA.ATGCGCCGGACTCGAAATCCGGT.ATACGGTTATa.CCGTAT..CGTGGGTTCGAATCCCAC..CCTTTCCGCCA tRNA-Ser-CGA-1-1 Sc: 88.9 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>........<<<<<...>>>>>.......<<<<<..<<<<<<<.... GGAAGCGTGGCCGAGTGGTttA.AGGCACTGGTCTTGAAAACCAGC.GACGG.GCAA...CCGTC..CGTGAGTTCGAATCTCAC..CGCTTCCGCCA tRNA-Ser-TGA-1-1 Sc: 88.3 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>.>>........<<.<<...>>>>>.......<<<<<..<<<<<<<.... GGAGACGTGGCCGAGAGGTcgA.AGGCACTCCCCTGCTAAGGGAGCATCTGGGCCAAa.ACCTGGAtCGAGGGTTCGAATCCCTC..CGTCTCCGCCA tRNA-Ser-GCT-1-1 Sc: 86.0
Sup tRNAs
Thr tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCATGTGGCTCAGT.GGTA.GAGCACTCCCTTGGTAAGGGAGAG...........GtCGGCAGTTCGATCCTGCCCATGGGCACCA tRNA-Thr-GGT-1-1 Sc: 82.3 >>>>>.>..>>>>.........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<.<<<<<.... GCCGGTGTAGCTCAGTTGGTA.GAGCAGCGCATTCGTAATGCGAAG...........GtCGGAAGTTCGAGTCTTCTCTCCGGCACCA tRNA-Thr-CGT-1-1 Sc: 80.1 >>>>>>>..>>>>.........<<<<.>.>>>.......<<<.<................>>>>>.......<<<<<<<<<<<<.... GCCGGCTTAGCTCATCTGGTA.GAGCAGTTGATTTGTAATCATCAG...........GtGGCGGGTTCGAGTCCTGCAGCCGGCACCA tRNA-Thr-TGT-1-1 Sc: 78.2
Trp tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... AGGGGTATAGCTCAACTGGCAGAGCGTCGGTCTCCAAAACCGAAG...........GtTGGGGGTTCGATTCCCTCTGCCCCTGCCA tRNA-Trp-CCA-1-1 Sc: 84.3
Tyr tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<.... GGAGGGGTGCCCGAGTGGCtaA.AGGGGGCAGACTGTAAATCTGTTGGCTTAC....GCCTaCGTTGGTTCGAATCCAAC.CTCCTCCACCA tRNA-Tyr-GTA-1-1 Sc: 76.4
Val tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... AGGCTCGTAGCTCAGTTGGTtA.GAGCACCACCTTGACATGGTGGGG...........GtCGTTGGTTCGAATCCAATCGAGCCTACCA tRNA-Val-GAC-1-1 Sc: 83.4 AGGCTCGTAGCTCAGTTGGTtA.GAGCACCACCTTGACATGGTGGGG...........GtCGTTGGTTCGAATCCAATCGAGCCTACCA tRNA-Val-GAC-1-2 Sc: 83.4 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCGGTTAGCTCAGC.GGT.A.GAGCACTGCCTTCACACGGCAGGG...........GtCACTGGTTCGATCCCAGTACCGCCCACCA tRNA-Val-CAC-1-1 Sc: 82.8 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGTGCTTAGCTCAGTTGGT.A.GAGCGGCGCCCTTACAAGGCGTAG...........GtCGGGAGTTCGAGCCTCTCAGCACCCACCA tRNA-Val-TAC-1-1 Sc: 86.3