tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 42
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 1
Predicted pseudogenes 1
Total tRNAs 44
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 920
Number of Codons: 256749

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
 
TGC
1
2
GCT
2.15
GCC
2.64
GCG
2.15
GCA
2.03
8.97%
GlyACC
 
GCC
1
CCC
1
TCC
1
3
GGT
2.52
GGC
2.71
GGG
0.76
GGA
1
6.99%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
0.63
CCC
0.59
CCG
1.52
CCA
1.22
3.96%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
1.21
ACC
1.87
ACG
1.79
ACA
1.33
6.2%
ValAAC
 
GAC
1
CAC
 
TAC
1
2
GTT
1.76
GTC
2.39
GTG
1.7
GTA
1.48
7.33%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
0.6
TCC
0.49
TCG
1.12
TCA
0.99
AGT
1.43
AGC
1.63
 
 
 
 
6.26%
ArgACG
 
GCG
1
CCG
 
TCG
1
 
 
 
 
CCT
1
TCT
1
4
CGT
1.57
CGC
1.72
CGG
0.69
CGA
0.79
 
 
 
 
AGG
0.3
AGA
0.38
5.45%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
5
CTT
1.77
CTC
2.22
CTG
2.2
CTA
1.35
 
 
 
 
TTG
1.22
TTA
0.88
9.64%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
2.26
TTC
1.37
 
 
 
 
3.63%
AsnATT
 
GTT
 
 
 
 
 
0
AAT
1.91
AAC
1.8
 
 
 
 
3.71%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
2.69
AAA
3.21
5.9%
AspATC
 
GTC
1
 
 
 
 
1
GAT
2.95
GAC
2.73
 
 
 
 
5.68%
Glu 
 
 
 
CTC
1
TTC
1
2
 
 
 
 
GAG
2.81
GAA
3.43
6.24%
HisATG
 
GTG
1
 
 
 
 
1
CAT
1.02
CAC
1.08
 
 
 
 
2.1%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
2.14
CAA
1.58
3.72%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
1
TAT
 
2
ATT
2.45
ATC
3.12
 
 
ATA
0.87
6.44%
fMet/Met 
 
 
 
CAT
1/1
 
 
2
 
 
 
 
ATG
2.23
 
 
2.23%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
1.7
TAC
1.71
 
 
 
 
3.41%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.06
TAG
0.14
TAA
0.17
0.37%
CysACA
1
GCA
1
 
 
 
 
2
TGT
0.3
TGC
0.27
 
 
 
 
0.57%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.11
 
 
1.11%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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