tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 76
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 1
Total tRNAs 77
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 4155
Number of Codons: 1382142

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
2
CGC
 
TGC
3
5
GCT
0.95
GCC
3.93
GCG
4.48
GCA
0.82
10.18%
GlyACC
 
GCC
4
CCC
1
TCC
1
6
GGT
1.38
GGC
4.13
GGG
1.32
GGA
0.55
7.38%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
0.43
CCC
0.79
CCG
3.16
CCA
0.29
4.67%
ThrAGT
 
GGT
2
CGT
1
TGT
1
4
ACT
0.39
ACC
2.95
ACG
1.61
ACA
0.31
5.26%
ValAAC
 
GAC
2
CAC
 
TAC
3
5
GTT
0.91
GTC
1.7
GTG
3.66
GTA
0.8
7.07%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
2
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
5
TCT
0.4
TCC
1.25
TCG
1.38
TCA
0.4
AGT
0.56
AGC
2.01
 
 
 
 
6%
ArgACG
3
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
1
6
CGT
1.59
CGC
2.79
CGG
1.21
CGA
0.29
 
 
 
 
AGG
0.13
AGA
0.17
6.18%
LeuAAG
 
GAG
1
CAG
4
TAG
1
 
 
 
 
CAA
1
TAA
2
9
CTT
0.54
CTC
0.87
CTG
7.46
CTA
0.26
 
 
 
 
TTG
1.63
TTA
0.5
11.26%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
2
 
 
 
 
2
TTT
1.68
TTC
2.02
 
 
 
 
3.7%
AsnATT
 
GTT
3
 
 
 
 
3
AAT
1.29
AAC
2.17
 
 
 
 
3.46%
Lys 
 
 
 
CTT
1
TTT
3
4
 
 
 
 
AAG
1.2
AAA
2.3
3.5%
AspATC
 
GTC
3
 
 
 
 
3
GAT
2.59
GAC
2.71
 
 
 
 
5.3%
Glu 
 
 
 
CTC
 
TTC
4
4
 
 
 
 
GAG
1.96
GAA
3.28
5.24%
HisATG
 
GTG
1
 
 
 
 
1
CAT
1.13
CAC
1.21
 
 
 
 
2.34%
Gln 
 
 
 
CTG
2
TTG
1
3
 
 
 
 
CAG
3.79
CAA
1.14
4.93%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
3
CAT
1
TAT
 
4
ATT
2.03
ATC
3.1
 
 
ATA
0.29
5.42%
fMet/Met 
 
 
 
CAT
3/2
 
 
5
 
 
 
 
ATG
2.53
 
 
2.53%
TyrATA
 
GTA
2
 
 
 
 
2
TAT
1.3
TAC
1.46
 
 
 
 
2.76%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.13
TAG
0.03
TAA
0.14
0.3%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.3
TGC
0.72
 
 
 
 
1.02%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.43
 
 
1.43%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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